| A review of ensemble methods in bioinformatics P Yang, Y Hwa Yang, B Bing Zhou, A Y Zomaya Current Bioinformatics 5 (4), 296-308, 2010 | 640* | 2010 |
| Dynamic adipocyte phosphoproteome reveals that Akt directly regulates mTORC2 SJ Humphrey, G Yang, P Yang, DJ Fazakerley, J Stöckli, JY Yang, ... Cell metabolism 17 (6), 1009-1020, 2013 | 494 | 2013 |
| Global phosphoproteomic analysis of human skeletal muscle reveals a network of exercise-regulated kinases and AMPK substrates NJ Hoffman, BL Parker, R Chaudhuri, KH Fisher-Wellman, M Kleinert, ... Cell metabolism 22 (5), 922-935, 2015 | 488 | 2015 |
| Ensemble deep learning in bioinformatics Y Cao, TA Geddes, JYH Yang, P Yang Nature Machine Intelligence 2 (9), 500-508, 2020 | 410 | 2020 |
| DNMT1 is essential for mammary and cancer stem cell maintenance and tumorigenesis R Pathania, S Ramachandran, S Elangovan, R Padia, P Yang, S Cinghu, ... Nature communications 6 (1), 6910, 2015 | 281 | 2015 |
| Histone-fold domain protein NF-Y promotes chromatin accessibility for cell type-specific master transcription factors AJ Oldfield*, P Yang*, AE Conway, S Cinghu, JM Freudenberg, ... Molecular cell 55 (5), 708-722, 2014 | 228 | 2014 |
| Fip1 regulates mRNA alternative polyadenylation to promote stem cell self‐renewal B Lackford, C Yao, GM Charles, L Weng, X Zheng, EA Choi, X Xie, J Wan, ... The EMBO journal 33 (8), 878-889, 2014 | 202 | 2014 |
| scMerge leverages factor analysis, stable expression, and pseudoreplication to merge multiple single-cell RNA-seq datasets Y Lin, S Ghazanfar, KYX Wang, ..., TP Speed, P Yang@, JYH Yang@ Proceedings of the National Academy of Sciences 116 (20), 9775-9784, 2019 | 179 | 2019 |
| Benchmarking clustering algorithms on estimating the number of cell types from single-cell RNA-sequencing data L Yu, Y Cao, JYH Yang, P Yang Genome biology 23 (1), 49, 2022 | 165 | 2022 |
| Multi-omic profiling reveals dynamics of the phased progression of pluripotency P Yang, SJ Humphrey, S Cinghu, R Pathania, AJ Oldfield, D Kumar, ... Cell Systems 8 (5), 427-445. e10, 2019 | 161 | 2019 |
| Impact of similarity metrics on single-cell RNA-seq data clustering T Kim, IR Chen, Y Lin, AYY Wang, JYH Yang, P Yang Briefings in bioinformatics 20 (6), 2316-2326, 2019 | 160 | 2019 |
| scClassify: sample size estimation and multiscale classification of cells using single and multiple reference Y Lin, Y Cao, HJ Kim, A Salim, TP Speed, DM Lin, P Yang@, JYH Yang@ Molecular Systems Biology 16 (6), e9389, 2020 | 156 | 2020 |
| Decoding the function of bivalent chromatin in development and cancer D Kumar, S Cinghu, AJ Oldfield, P Yang, R Jothi Genome research 31 (12), 2170-2184, 2021 | 147 | 2021 |
| Global redox proteome and phosphoproteome analysis reveals redox switch in Akt Z Su*, J Burchfield*, P Yang*, S Humphrey, G Yang, D Francis, S Yasmin, ... Nature Communications 10, 2019 | 144 | 2019 |
| An integrative systems genetic analysis of mammalian lipid metabolism BL Parker, AC Calkin, MM Seldin, MF Keating, EJ Tarling, P Yang, ... Nature 567 (7747), 187-193, 2019 | 143 | 2019 |
| Mitochondrial CoQ deficiency is a common driver of mitochondrial oxidants and insulin resistance DJ Fazakerley, R Chaudhuri, P Yang, GJ Maghzal, KC Thomas, JR Krycer, ... Elife 7, e32111, 2018 | 143 | 2018 |
| mTORC1 is a major regulatory node in the FGF21 signaling network in adipocytes AY Minard, SX Tan, P Yang, DJ Fazakerley, W Domanova, BL Parker, ... Cell reports 17 (1), 29-36, 2016 | 140 | 2016 |
| Single‐cell transcriptome profiling reveals multicellular ecosystem of nucleus pulposus during degeneration progression J Tu, W Li, S Yang, P Yang, Q Yan, S Wang, K Lai, X Bai, C Wu, W Ding, ... Advanced Science 9 (3), 2103631, 2022 | 137 | 2022 |
| CiteFuse enables multi-modal analysis of CITE-seq data HJ Kim, Y Lin, TA Geddes, J Yang, P Yang Bioinformatics 36 (14), 4137-4143, 2020 | 119 | 2020 |
| PhosR enables processing and functional analysis of phosphoproteomic data HJ Kim, T Kim, NJ Hoffman, D Xiao, DE James, SJ Humphrey, P Yang Cell reports 34 (8), 2021 | 115 | 2021 |
Jean Yee Hwa YangUniversity of SydneyVerified email at sydney.edu.au
