| Modes and cuts in metabolic networks: Complexity and algorithms V Acuna, F Chierichetti, V Lacroix, A Marchetti-Spaccamela, MF Sagot, ... Biosystems 95 (1), 51-60, 2009 | 146 | 2009 |
| A note on the complexity of finding and enumerating elementary modes V Acuña, A Marchetti-Spaccamela, MF Sagot, L Stougie Biosystems 99 (3), 210-214, 2010 | 61 | 2010 |
| Graph-Based Analysis of the Metabolic Exchanges between Two Co-Resident Intracellular Symbionts, Baumannia cicadellinicola and Sulcia muelleri, with Their Insect Host … L Cottret, PV Milreu, V Acuña, A Marchetti-Spaccamela, L Stougie, ... PLoS computational biology 6 (9), e1000904, 2010 | 50 | 2010 |
| Enumerating precursor sets of target metabolites in a metabolic network L Cottret, P Vieira Milreu, V Acuña, A Marchetti-Spaccamela, ... International Workshop on Algorithms in Bioinformatics, 233-244, 2008 | 50 | 2008 |
| Algorithms and complexity of enumerating minimal precursor sets in genome-wide metabolic networks V Acuña, PV Milreu, L Cottret, A Marchetti-Spaccamela, L Stougie, ... Bioinformatics 28 (19), 2474-2483, 2012 | 48 | 2012 |
| Enumeration of minimal stoichiometric precursor sets in metabolic networks R Andrade, M Wannagat, CC Klein, V Acuña, A Marchetti-Spaccamela, ... Algorithms for Molecular Biology 11 (1), 25, 2016 | 35 | 2016 |
| Telling metabolic stories to explore metabolomics data: a case study on the yeast response to cadmium exposure PV Milreu, CC Klein, L Cottret, V Acuna, E Birmele, M Borassi, C Junot, ... Bioinformatics 30 (1), 61-70, 2014 | 30 | 2014 |
| Telling stories: Enumerating maximal directed acyclic graphs with a constrained set of sources and targets V Acuña, E Birmelé, L Cottret, P Crescenzi, F Jourdan, V Lacroix, ... Theoretical Computer Science 457, 1-9, 2012 | 28 | 2012 |
| Solving the maximum edge biclique packing problem on unbalanced bipartite graphs V Acuña, CE Ferreira, AS Freire, E Moreno Discrete Applied Mathematics 164, 2-12, 2014 | 25 | 2014 |
| On bubble generators in directed graphs V Acuna, R Grossi, GF Italiano, L Lima, R Rizzi, G Sacomoto, MF Sagot, ... International Workshop on Graph-Theoretic Concepts in Computer Science, 18-31, 2017 | 10 | 2017 |
| Integration of Biological Networks for Acidithiobacillus thiooxidans Describes a Modular Gene Regulatory Organization of Bioleaching Pathways MP Cortés, V Acuña, D Travisany, A Siegel, A Maass, M Latorre Frontiers in Molecular Biosciences 6, 155, 2020 | 8 | 2020 |
| Unveiling abundance-dependent metabolic phenotypes of microbial communities NE Jiménez, V Acuña, MP Cortés, D Eveillard, AE Maass Msystems 8 (5), e00492-23, 2023 | 7 | 2023 |
| Enumerating chemical organisations in consistent metabolic networks: Complexity and algorithms PV Milreu, V Acuña, E Birmelé, P Crescenzi, A Marchetti-Spaccamela, ... International Workshop on Algorithms in Bioinformatics, 226-237, 2010 | 5 | 2010 |
| On bubble generators in directed graphs V Acuña, R Grossi, GF Italiano, L Lima, R Rizzi, G Sacomoto, MF Sagot, ... Algorithmica 82 (4), 898-914, 2020 | 3 | 2020 |
| Deciphering transcriptional regulations coordinating the response to environmental changes V Acuña, A Aravena, C Guziolowski, D Eveillard, A Siegel, A Maass BMC bioinformatics 17 (1), 35, 2016 | 2 | 2016 |
| Modeling parsimonious putative regulatory networks: Complexity and heuristic approach V Acuña, A Aravena, A Maass, A Siegel International Conference on Verification, Model Checking, and Abstract …, 2014 | 2 | 2014 |
| Metabolic stories: uncovering all possible scenarios for interpreting metabolomics data. L Stougie, M PV, M Morino, V Acuna, E Birmele, L Cottret, V Lacroix, ... First RECOMB Satellite Conference on Open Problems in Algorithmic Biology …, 2012 | 2 | 2012 |
| The biclique k-clustering problem in bipartite graphs and its application in bioinformatics V Acuña, CE Ferreira, AS Freire, E Moreno Electronic Notes in Discrete Mathematics 36, 159-166, 2010 | 2 | 2010 |
| A family of tree-based generators for bubbles in directed graphs V Acuña, L Lima, GF Italiano, L Pepè Sciarria, MF Sagot, B Sinaimeri International Workshop on Combinatorial Algorithms, 17-29, 2020 | 1 | 2020 |
| Reproduction matrix for an epidemic and lockdowns in a city V Acuña, MP Cortés, A Hart, S Martínez, JC Maureira arXiv preprint arXiv:2005.09556, 2020 | 1 | 2020 |
Leen StougieSenior Researcher CWI, Prof. of Operations Research Vrije Universiteit, AmsterdamVerified email at cwi.nl
