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Rommel Ramos
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GIPSy: genomic island prediction software
SC Soares, H Geyik, RTJ Ramos, PHCG de Sá, EGV Barbosa, ...
Journal of Biotechnology 232, 2-11, 2016
1702016
The pan-genome of the animal pathogen Corynebacterium pseudotuberculosis reveals differences in genome plasticity between the biovar ovis and equi strains
SC Soares, A Silva, E Trost, J Blom, R Ramos, A Carneiro, A Ali, ...
PLoS One 8 (1), e53818, 2013
1472013
Inside the pan-genome-methods and software overview
L Carlos Guimaraes, L Benevides de Jesus, M Vinicius Canario Viana, ...
Current genomics 16 (4), 245-252, 2015
1362015
Exoproteome and Secretome Derived Broad Spectrum Novel Drug and Vaccine Candidates in Vibrio cholerae Targeted by Piper betel Derived Compounds
D Barh, N Barve, K Gupta, S Chandra, N Jain, S Tiwari, N Leon-Sicairos, ...
PloS one 8 (1), e52773, 2013
1362013
Evidence for reductive genome evolution and lateral acquisition of virulence functions in two Corynebacterium pseudotuberculosis strains
JC Ruiz, V D'Afonseca, A Silva, A Ali, AC Pinto, AR Santos, AAMC Rocha, ...
PloS one 6 (4), e18551, 2011
1232011
GO FEAT: a rapid web-based functional annotation tool for genomic and transcriptomic data
FA Araujo, D Barh, A Silva, L Guimarães, RTJ Ramos
Scientific reports 8 (1), 1794, 2018
1152018
PIPS: Pathogenicity Island Prediction Software
SC Soares, VAC Abreu, RTJ Ramos, L Cerdeira, A Silva, J Baumbach, ...
PloS one 7 (2), e30848, 2012
952012
Performance comparison of deep learning autoencoders for cancer subtype detection using multi-omics data
EF Franco, P Rana, A Cruz, VV Calderon, V Azevedo, RTJ Ramos, ...
Cancers 13 (9), 2013, 2021
902021
High-throughput sequencing of black pepper root transcriptome
SMC Gordo, DG Pinheiro, ECO Moreira, SM Rodrigues, MC Poltronieri, ...
BMC plant biology 12 (1), 168, 2012
892012
Pan‐Genome Analysis of Human Gastric Pathogen H. pylori: Comparative Genomics and Pathogenomics Approaches to Identify Regions Associated with …
A Ali, A Naz, SC Soares, M Bakhtiar, S Tiwari, SS Hassan, F Hanan, ...
BioMed research international 2015 (1), 139580, 2015
752015
Campylobacter fetus subspecies: Comparative genomics and prediction of potential virulence targets
A Ali, SC Soares, AR Santos, LC Guimarães, E Barbosa, SS Almeida, ...
Gene 508 (2), 145-156, 2012
742012
Complete Genome Sequence of Corynebacterium pseudotuberculosis I19, a Strain Isolated from a Cow in Israel with Bovine Mastitis
A Silva, MPC Schneider, L Cerdeira, MS Barbosa, RTJ Ramos, ...
Journal of bacteriology 193 (1), 323-324, 2011
732011
Genome sequence of Exiguobacterium antarcticum B7, isolated from a biofilm in Ginger Lake, King George Island, Antarctica
AR Carneiro, RTJ Ramos, H Dall'Agnol, AC Pinto, S de Castro Soares, ...
Journal of bacteriology 194 (23), 6689-6690, 2012
662012
Genome sequence of Corynebacterium pseudotuberculosis biovar equi strain 258 and prediction of antigenic targets to improve biotechnological vaccine production
SC Soares, E Trost, RTJ Ramos, AR Carneiro, AR Santos, AC Pinto, ...
Journal of biotechnology 167 (2), 135-141, 2013
652013
Differential transcriptional profile of Corynebacterium pseudotuberculosis in response to abiotic stresses
AC Pinto, PHCG de Sá, RTJ Ramos, S Barbosa, HPM Barbosa, ...
BMC genomics 15 (1), 14, 2014
622014
Rapid hybrid de novo assembly of a microbial genome using only short reads: Corynebacterium pseudotuberculosis I19 as a case study
LT Cerdeira, AR Carneiro, RTJ Ramos, SS de Almeida, MPC Schneider, ...
Journal of Microbiological Methods 86 (2), 218-223, 2011
582011
Artificial neural networks for short-term forecasting of cases, deaths, and hospital beds occupancy in the COVID-19 pandemic at the Brazilian Amazon
MB Braga, RS Fernandes, GN Souza Jr, JEC Rocha, CJF Dolácio, ...
PloS one 16 (3), e0248161, 2021
472021
Prediction of new vaccine targets in the core genome of Corynebacterium pseudotuberculosis through omics approaches and reverse vaccinology
CL Araújo, J Alves, W Nogueira, LC Pereira, AC Gomide, R Ramos, ...
Gene 702, 36-45, 2019
462019
The Detection and Sequencing of a Broad-Host-Range Conjugative IncP-1β Plasmid in an Epidemic Strain of Mycobacterium abscessus subsp. bolletii
SC Leão, CK Matsumoto, A Carneiro, RT Ramos, CL Nogueira, ...
PLoS One 8 (4), e60746, 2013
452013
Molecular characterisation of dengue virus type 1 reveals lineage replacement during circulation in Brazilian territory
AR Carneiro, ACR Cruz, M Vallinoto, DV Melo, RTJ Ramos, ...
Memorias do Instituto Oswaldo Cruz 107, 805-812, 2012
442012
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Articles 1–20