| Combining tumor genome simulation with crowdsourcing to benchmark somatic single-nucleotide-variant detection AD Ewing, KE Houlahan, Y Hu, K Ellrott, C Caloian, TN Yamaguchi, ... Nature Methods 12, 623–630, 2015 | 366 | 2015 |
| DiffSplice: the genome-wide detection of differential splicing events with RNA-seq Y Hu, Y Huang, Y Du, CF Orellana, D Singh, AR Johnson, A Monroy, ... Nucleic acids research 41 (2), e39-e39, 2013 | 198 | 2013 |
| FDM: a graph-based statistical method to detect differential transcription using RNA-seq data D Singh, CF Orellana, Y Hu, CD Jones, Y Liu, DY Chiang, J Liu, JF Prins Bioinformatics 27 (19), 2633-2640, 2011 | 85 | 2011 |
| Robust detection of alternative splicing in a population of single cells JD Welch, Y Hu, JF Prins Nucleic acids research 44 (8), e73-e73, 2016 | 63 | 2016 |
| Combining accurate tumor genome simulation with crowdsourcing to benchmark somatic structural variant detection AY Lee, AD Ewing, K Ellrott, Y Hu, KE Houlahan, JC Bare, SMG Espiritu, ... Genome biology 19 (1), 188, 2018 | 58 | 2018 |
| Global optimization of somatic variant identification in cancer genomes with a global community challenge PC Boutros, AD Ewing, K Ellrott, TC Norman, KK Dang, Y Hu, MR Kellen, ... Nature genetics 46 (4), 318-319, 2014 | 54 | 2014 |
| A robust method for transcript quantification with RNA-Seq data Y Huang, Y Hu, CD Jones, JN MacLeod, DY Chiang, Y Liu, JF Prins, J Liu Journal of Computational Biology 20 (3), 167-187, 2013 | 39 | 2013 |
| Unsupervised learning of high-order structural semantics from images J Gao, Y Hu, J Liu, R Yang 2009 IEEE 12th International Conference on Computer Vision, 2122-2129, 2009 | 39 | 2009 |
| A community challenge to evaluate RNA-seq, fusion detection, and isoform quantification methods for cancer discovery A Creason, D Haan, K Dang, KE Chiotti, M Inkman, A Lamb, T Yu, Y Hu, ... Cell systems 12 (8), 827-838. e5, 2021 | 37 | 2021 |
| A probabilistic framework for aligning paired-end RNA-seq data Y Hu, K Wang, X He, DY Chiang, JF Prins, J Liu Bioinformatics 26 (16), 1950-1957, 2010 | 33 | 2010 |
| Challenge participants, Kellen MR, Norman TC, Haussler D, Friend SH, Stolovitzky G, Margolin AA, Stuart JM, Boutros PC. Combining tumor genome simulation with crowdsourcing to … AD Ewing, KE Houlahan, Y Hu, K Ellrott, C Caloian, TN Yamaguchi, ... Nat Methods 12 (7), 623-30, 2015 | 16 | 2015 |
| ICGC-TCGA DREAM Somatic Mutation Calling Challenge participants AD Ewing, KE Houlahan, Y Hu, K Ellrott, C Caloian, TN Yamaguchi, ... Kellen, MR, Norman, TC, Haussler, D., Friend, SH, Stolovitzky, G., Margolin …, 2015 | 10 | 2015 |
| Piecing the puzzle together: a revisit to transcript reconstruction problem in RNA-seq Y Huang, Y Hu, J Liu BMC Bioinformatics 15 (Suppl 9), S3, 2014 | 2 | 2014 |
| A Novel Computational Framework for Transcriptome Analysis with RNA-seq Data Y Hu | 1 | 2013 |
| RNA-seq differential splicing analysis of over six hundred colorectal cancer transcriptomes reveals subtype-specific isoform usage Y Hu, R Dienstmann, J Guinney CANCER RESEARCH 75 (22), 2015 | | 2015 |
| Abstract B1-61: RNA-seq differential splicing analysis of over six hundred colorectal cancer transcriptomes reveals subtype-specific isoform usage Y Hu, R Dienstmann, J Guinney Cancer Research 75 (22_Supplement_2), B1-61-B1-61, 2015 | | 2015 |
| RNA-seq differential transcription analysis of TCGA colorectal cancer (CRC) transcriptomes reveals subtype-specific isoform usage Y Hu, R Dienstmann, J Guinney Cancer Research 75 (15_Supplement), 1932-1932, 2015 | | 2015 |
| A robust method for transcript quantification with RNA-seq data Y Huang, Y Hu, C Jones, J MacLeod, D Chiang, Y Liu, J Prins, J Liu Research in Computational Molecular Biology, 127-147, 2012 | | 2012 |
| Combining accurate tumour genome simulation with crowd-sourcing to benchmark somatic single nucleotide variant detection AD Ewing, KE Houlahan, Y Hu, K Ellrott, C Caloian, A Margolin, JM Stuart, ... | | |
