| Best practices for single-cell analysis across modalities L Heumos, AC Schaar, C Lance, A Litinetskaya, F Drost, L Zappia, ... Nature Reviews Genetics 24 (8), 550-572, 2023 | 1003 | 2023 |
| Spatial multi-omic map of human myocardial infarction C Kuppe, RO Ramirez Flores, Z Li, S Hayat, RT Levinson, X Liao, ... Nature 608 (7924), 766-777, 2022 | 623 | 2022 |
| Deep spatial profiling of human COVID-19 brains reveals neuroinflammation with distinct microanatomical microglia-T-cell interactions M Schwabenland, H Salié, J Tanevski, S Killmer, MS Lago, AE Schlaak, ... Immunity 54 (7), 1594-1610. e11, 2021 | 345 | 2021 |
| Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data CH Holland, J Tanevski, J Perales-Patón, J Gleixner, MP Kumar, E Mereu, ... Genome biology 21 (1), 36, 2020 | 330 | 2020 |
| Explainable multiview framework for dissecting spatial relationships from highly multiplexed data J Tanevski, ROR Flores, A Gabor, D Schapiro, J Saez-Rodriguez Genome biology 23 (1), 97, 2022 | 218 | 2022 |
| LIANA+ provides an all-in-one framework for cell–cell communication inference D Dimitrov, PSL Schäfer, E Farr, P Rodriguez-Mier, S Lobentanzer, ... Nature Cell Biology 26 (9), 1613-1622, 2024 | 136 | 2024 |
| Multi-level information fusion for learning a blood pressure predictive model using sensor data M Simjanoska, S Kochev, J Tanevski, AM Bogdanova, G Papa, T Eftimov Information Fusion 58, 24-39, 2020 | 53 | 2020 |
| LIANA+: an all-in-one cell-cell communication framework D Dimitrov, PSL Schäfer, E Farr, P Rodriguez Mier, S Lobentanzer, ... BioRxiv, 2023.08. 19.553863, 2023 | 36 | 2023 |
| Explainable multi-view framework for dissecting intercellular signaling from highly multiplexed spatial data J Tanevski, ROR Flores, A Gabor, D Schapiro, J Saez-Rodriguez BioRxiv, 2020.05. 08.084145, 2020 | 33 | 2020 |
| Learning stochastic process-based models of dynamical systems from knowledge and data J Tanevski, L Todorovski, S Džeroski BMC systems biology 10 (1), 30, 2016 | 28 | 2016 |
| Gene selection for optimal prediction of cell position in tissues from single-cell transcriptomics data J Tanevski, T Nguyen, B Truong, N Karaiskos, ME Ahsen, X Zhang, C Shu, ... Life Science Alliance 3 (11), 2020 | 22 | 2020 |
| Predictive model for the quantitative analysis of human skin using photothermal radiometry and diffuse reflectance spectroscopy N Verdel, J Tanevski, S Džeroski, B Majaron Biomedical Optics Express 11 (3), 1679-1696, 2020 | 20 | 2020 |
| Cell‐to‐cell and type‐to‐type heterogeneity of signaling networks: insights from the crowd A Gabor, M Tognetti, A Driessen, J Tanevski, B Guo, W Cao, H Shen, T Yu, ... Molecular systems biology 17 (10), e10402, 2021 | 19 | 2021 |
| Combinatorial search for selecting the structure of models of dynamical systems with equation discovery J Tanevski, L Todorovski, S Džeroski Engineering Applications of Artificial Intelligence 89, 103423, 2020 | 18 | 2020 |
| Opening the black box: spatial transcriptomics and the relevance of artificial intelligence–detected prognostic regions in high-grade serous carcinoma AR Laury, S Zheng, N Aho, R Fallegger, S Hänninen, J Saez-Rodriguez, ... Modern Pathology 37 (7), 100508, 2024 | 14 | 2024 |
| DOT: a flexible multi-objective optimization framework for transferring features across single-cell and spatial omics A Rahimi, LA Vale-Silva, M Fälth Savitski, J Tanevski, J Saez-Rodriguez Nature Communications 15 (1), 4994, 2024 | 14 | 2024 |
| Process-based design of dynamical biological systems J Tanevski, L Todorovski, S Džeroski Scientific reports 6 (1), 34107, 2016 | 13 | 2016 |
| Domain-specific model selection for structural identification of the Rab5-Rab7 dynamics in endocytosis J Tanevski, L Todorovski, Y Kalaidzidis, S Dzeroski BMC Systems Biology 9 (31), 2015 | 12 | 2015 |
| A machine-learning model for quantitative characterization of human skin using photothermal radiometry and diffuse reflectance spectroscopy N Verdel, J Tanevski, S Džeroski, B Majaron Photonics in Dermatology and Plastic Surgery 2019 10851, 1085107, 2019 | 11 | 2019 |
| Process-based modeling and design of dynamical systems J Tanevski, N Simidjievski, L Todorovski, S Džeroski Joint European Conference on Machine Learning and Knowledge Discovery in …, 2017 | 11 | 2017 |
Julio Saez RodriguezHeidelberg UniversityVerified email at uni-heidelberg.de
