| Mutual repression enhances the steepness and precision of gene expression boundaries TR Sokolowski, T Erdmann, PR Ten Wolde PLoS Comput Biol 8 (8), e1002654, 2012 | 70 | 2012 |
| Optimizing information flow in small genetic networks. IV. Spatial coupling TR Sokolowski, G Tkačik Phys Rev E 91 (6), 062710, 2015 | 55 | 2015 |
| eGFRD in all dimensions TR Sokolowski, J Paijmans, L Bossen, M Wehrens, T Miedema, ... J Chem Phys 150 (5), 054108, 2019 | 53 | 2019 |
| Statistical analysis and optimality of neural systems W Młynarski, M Hledík, TR Sokolowski, G Tkačik Neuron 109 (7), 1227-1241. e5, 2021 | 46 | 2021 |
| Deriving a genetic regulatory network from an optimization principle TR Sokolowski, T Gregor, W Bialek, G Tkačik Proceedings of the National Academy of Sciences 122 (1), e2402925121, 2025 | 28 | 2025 |
| Extending the dynamic range of transcription factor action by translational regulation TR Sokolowski, AM Walczak, W Bialek, G Tkačik Phys Rev E 93 (2), 022404, 2016 | 14 | 2016 |
| Chimera proteins with affinity for membranes and microtubule tips polarize in the membrane of fission yeast cells P Recouvreux, TR Sokolowski, A Grammoustianou, PR ten Wolde, ... Proc Natl Acad Sci USA 113 (7), 1811-1816, 2016 | 11 | 2016 |
| AI-powered simulation-based inference of a genuinely spatial-stochastic gene regulation model of early mouse embryogenesis MA Ramirez Sierra, TR Sokolowski PLOS Computational Biology 20 (11), e1012473, 2024 | 10 | 2024 |
| A Tight Upper Bound on Mutual Information M Hledík, TR Sokolowski, G Tkačik 2019 IEEE Information Theory Workshop (ITW), 1-5, 2019 | 10 | 2019 |
| Spatial-Stochastic Simulation of Reaction-Diffusion Systems TR Sokolowski, PR ten Wolde B Munsky, WS Hlavacek, LS Tsimring (ed.), "Quantitative Biology: Theory …, 2018 | 10 | 2018 |
| Comparing AI versus Optimization Workflows for Simulation-Based Inference of Spatial-Stochastic Systems MA Ramirez Sierra, T Sokolowski Machine Learning: Science and Technology, 2024 | 6 | 2024 |
| A computational study of robust formation of spatial protein patterns TR Sokolowski Ph.D. thesis, Vrije Universiteit Amsterdam, ISBN 978-90-77209-72-1 …, 2013 | 5 | 2013 |
| Green’s Function Reaction Dynamics—An Exact and Efficient Way To simulate Intracellular Pattern Formation T Sokolowski, L Bossen, T Miedema, N Becker AIP Conference Proceedings 1281 (1), 1342-1345, 2010 | 3 | 2010 |
| Long-range k-core percolation CF Moukarzel, T Sokolowski J. Phys.: Conf. Ser 246, 012019, 2010 | 3 | 2010 |
| Unifying Physics-and Data-Driven Modeling via Novel Causal Spatiotemporal Graph Neural Network for Interpretable Epidemic Forecasting S Han, L Stelz, TR Sokolowski, K Zhou, H Stöcker arXiv preprint arXiv:2504.05140, 2025 | 2 | 2025 |
| Stable developmental patterns of gene expression without morphogen gradients M Majka, NB Becker, PR Wolde, M Zagorski, TR Sokolowski PLoS Computational Biology 20 (12), e1012555, 2024 | 2 | 2024 |
| Information theory entering soils and tissues TR Sokolowski Cell Systems 13 (7), 511-513, 2022 | 2 | 2022 |
| Epidemiology-informed Spatiotemporal Graph Neural Network for heterogeneity-driven interpretable epidemic forecasting S Han, L Stelz, TR Sokolowski, K Zhou, H Stöcker Engineering Applications of Artificial Intelligence 162, 112764, 2025 | | 2025 |
| Initial Luminally Deposited FGF4 Critically Influences Blastocyst Patterning MA Ramirez-Sierra, TR Sokolowski arXiv preprint arXiv:2505.23650, 2025 | | 2025 |
| Information-Theoretical Measures for Developmental Cell-Fate Proportioning Processes MA Ramirez-Sierra, TR Sokolowski arXiv preprint arXiv:2505.23659, 2025 | | 2025 |
Gasper TkacikProfessor, Deputy Dean of the Graduate School, Institute of Science and Technology AustriaVerified email at ist.ac.at
