| Third-generation in situ hybridization chain reaction: multiplexed, quantitative, sensitive, versatile, robust HMT Choi, M Schwarzkopf, ME Fornace, A Acharya, G Artavanis, ... Development 145 (12), dev165753, 2018 | 1503 | 2018 |
| A unified dynamic programming framework for the analysis of interacting nucleic acid strands: enhanced models, scalability, and speed ME Fornace, NJ Porubsky, NA Pierce ACS Synthetic Biology 9 (10), 2665-2678, 2020 | 149 | 2020 |
| Embedded mean-field theory ME Fornace, J Lee, K Miyamoto, FR Manby, TF Miller III Journal of chemical theory and computation 11 (2), 568-580, 2015 | 118 | 2015 |
| NUPACK: Analysis and Design of Nucleic Acid Structures, Devices, and Systems ME Fornace, J Huang, CT Newman, NJ Porubsky, MB Pierce, NA Pierce ChemRxiv, 2022 | 72 | 2022 |
| Reduced partition function ratios of iron and oxygen in goethite M Blanchard, N Dauphas, MY Hu, M Roskosz, EE Alp, DC Golden, CK Sio, ... Geochimica et Cosmochimica Acta 151, 19-33, 2015 | 49 | 2015 |
| NUPACK: Analysis and Design of Nucleic Acid Structures ME Fornace, J Huang, CT Newman, NJ Porubsky, MB Pierce, NA Pierce Devices, and Systems 10, 2022 | 26 | 2022 |
| HCR spectral imaging: 10-plex, quantitative, high-resolution RNA and protein imaging in highly autofluorescent samples SJ Schulte, ME Fornace, JK Hall, GJ Shin, NA Pierce Development 151 (4), dev202307, 2024 | 25 | 2024 |
| Isotopic Constraints on the Nature of Primary Precipitates in Archean–Early Paleoproterozoic Iron Formations from Determinations of the Iron Phonon Density of States of … AW Heard, N Dauphas, IL Hinz, JE Johnson, M Blanchard, EE Alp, MY Hu, ... ACS Earth and Space Chemistry 7 (4), 712-727, 2023 | 10 | 2023 |
| Column and row subset selection using nuclear scores: algorithms and theory for Nystr\"{o} m approximation, CUR decomposition, and graph Laplacian reduction M Fornace, M Lindsey arXiv preprint arXiv:2407.01698, 2024 | 8 | 2024 |
| Computational methods for simulating and parameterizing nucleic acid secondary structure thermodynamics and kinetics ME Fornace California Institute of Technology, 2022 | 2 | 2022 |
| Models and Algorithms for Equilibrium Analysis of Mixed-Material Nucleic Acid Systems A Nanjundiah, ME Fornace, SJ Schulte, NA Pierce ACS Synthetic Biology, 2025 | 1 | 2025 |
| An approximation theory for Markov chain compression M Fornace, M Lindsey arXiv preprint arXiv:2506.22918, 2025 | 1 | 2025 |
| Fast and Accurate Interpolative Decompositions for General, Sparse, and Structured Tensors Y Zhang, M Fornace, M Lindsey arXiv preprint arXiv:2503.18921, 2025 | 1 | 2025 |
| Chronological and dynamical constraints on the accretion of Mars N Dauphas, H Kobayashi, M Fornace, H Tang 44th Annual Lunar and Planetary Science Conference, 1305, 2013 | 1 | 2013 |
| Constraints on the Nature of Primary Precipitates in Archean Iron Formations from Spectroscopic and Theoretical Determinations of the Equilibrium Iron Isotopic Behavior of … A Heard, N Dauphas, IL Hinz, JE Johnson, M Blanchard, EE Alp, MY Hu, ... AGU Fall Meeting Abstracts 2022, PP52B-03, 2022 | | 2022 |
| Embedded mean-field theory: Toward a large-scale ab-initio molecular dynamics J Lee, K Miyamoto, M Fornace, F Manby, T Miller ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 250, 2015 | | 2015 |
| Correction to embedded mean-field theory ME Fornace, J Lee, K Miyamoto, FR Manby, TF Miller III Journal of Chemical Theory and Computation 11 (8), 3968-3968, 2015 | | 2015 |
| Embedded Mean-Field Theory (vol 11, pg 568, 2015) ME Fornace, J Lee, K Miyamoto, FR Manby, TF Miller III JOURNAL OF CHEMICAL THEORY AND COMPUTATION 11 (8), 3968-3968, 2015 | | 2015 |
| HCR Imaging Python Module User Guide ME Fornace, SJ Schulte, NA Pierce | | |
| Supporting Information: Embedded mean-field theory ME Fornace, J Lee, K Miyamoto, FR Manby, TF Miller III | | |
