| Multiple diverse ligands binding at a single protein site: a matter of pre‐existing populations B Ma, M Shatsky, HJ Wolfson, R Nussinov Protein science 11 (2), 184-197, 2002 | 561 | 2002 |
| A method for simultaneous alignment of multiple protein structures M Shatsky, R Nussinov, HJ Wolfson Proteins: Structure, Function, and Bioinformatics 56 (1), 143-156, 2004 | 522 | 2004 |
| Taking geometry to its edge: fast unbound rigid (and hinge‐bent) docking D Schneidman‐Duhovny, Y Inbar, V Polak, M Shatsky, I Halperin, ... Proteins: Structure, Function, and Bioinformatics 52 (1), 107-112, 2003 | 326 | 2003 |
| Flexible protein alignment and hinge detection M Shatsky, R Nussinov, HJ Wolfson Proteins: Structure, Function, and Bioinformatics 48 (2), 242-256, 2002 | 179 | 2002 |
| MultiBind and MAPPIS: webservers for multiple alignment of protein 3D-binding sites and their interactions A Shulman-Peleg, M Shatsky, R Nussinov, HJ Wolfson Nucleic acids research 36 (suppl_2), W260-W264, 2008 | 123 | 2008 |
| FlexProt: alignment of flexible protein structures without a predefinition of hinge regions M Shatsky, R Nussinov, HJ Wolfson Journal of Computational Biology 11 (1), 83-106, 2004 | 101 | 2004 |
| MultiProt—a multiple protein structural alignment algorithm M Shatsky, R Nussinov, HJ Wolfson International Workshop on Algorithms in Bioinformatics, 235-250, 2002 | 101 | 2002 |
| The multiple common point set problem and its application to molecule binding pattern detection M Shatsky, A Shulman-Peleg, R Nussinov, HJ Wolfson Journal of Computational Biology 13 (2), 407-428, 2006 | 98 | 2006 |
| Spatial chemical conservation of hot spot interactions in protein-protein complexes A Shulman-Peleg, M Shatsky, R Nussinov, HJ Wolfson BMC biology 5 (1), 43, 2007 | 87 | 2007 |
| A method for the alignment of heterogeneous macromolecules from electron microscopy M Shatsky, RJ Hall, SE Brenner, RM Glaeser Journal of structural biology 166 (1), 67-78, 2009 | 70 | 2009 |
| Optimization of multiple‐sequence alignment based on multiple‐structure alignment M Shatsky, R Nussinov, HJ Wolfson Proteins: Structure, Function, and Bioinformatics 62 (1), 209-217, 2006 | 60 | 2006 |
| CAGI, the Critical Assessment of Genome Interpretation, establishes progress and prospects for computational genetic variant interpretation methods Genome biology 25 (1), 53, 2024 | 56 | 2024 |
| EMatch: discovery of high resolution structural homologues of protein domains in intermediate resolution cryo-EM maps K Lasker, O Dror, M Shatsky, R Nussinov, HJ Wolfson IEEE/ACM transactions on computational biology and bioinformatics 4 (1), 28-39, 2007 | 54 | 2007 |
| Prediction of interacting single-stranded RNA bases by protein-binding patterns A Shulman-Peleg, M Shatsky, R Nussinov, HJ Wolfson Journal of molecular biology 379 (2), 299-316, 2008 | 53 | 2008 |
| Automated multi-model reconstruction from single-particle electron microscopy data M Shatsky, RJ Hall, E Nogales, J Malik, SE Brenner Journal of structural biology 170 (1), 98-108, 2010 | 44 | 2010 |
| BioInfo3D: a suite of tools for structural bioinformatics M Shatsky, O Dror, D Schneidman-Duhovny, R Nussinov, HJ Wolfson Nucleic acids research 32 (suppl_2), W503-W507, 2004 | 43 | 2004 |
| From structure to function: methods and applications HJ Wolfson, M Shatsky, D Schneidman-Duhovny, O Dror, ... Current Protein and Peptide Science 6 (2), 171-183, 2005 | 42 | 2005 |
| Survey of large protein complexes in D. vulgaris reveals great structural diversity BG Han, M Dong, H Liu, L Camp, J Geller, M Singer, TC Hazen, M Choi, ... Proceedings of the National Academy of Sciences 106 (39), 16580-16585, 2009 | 41 | 2009 |
| Recognition of binding patterns common to a set of protein structures M Shatsky, A Shulman-Peleg, R Nussinov, HJ Wolfson Annual International Conference on Research in Computational Molecular …, 2005 | 40 | 2005 |
| High-throughput Isolation and Characterization of Untagged Membrane Protein Complexes: Outer Membrane Complexes of Desulfovibrio vulgaris PJ Walian, S Allen, M Shatsky, L Zeng, ED Szakal, H Liu, SC Hall, ... Journal of proteome research 11 (12), 5720-5735, 2012 | 33 | 2012 |