| From FAANG to fork: application of highly annotated genomes to improve farmed animal production EL Clark, AL Archibald, HD Daetwyler, MAM Groenen, PW Harrison, ... Genome Biology 21 (1), 285, 2020 | 161 | 2020 |
| A high resolution atlas of gene expression in the domestic sheep (Ovis aries) EL Clark, SJ Bush, MEB McCulloch, IL Farquhar, R Young, L Lefevre, ... PLoS genetics 13 (9), e1006997, 2017 | 161 | 2017 |
| Genomic diversity affects the accuracy of bacterial single-nucleotide polymorphism–calling pipelines SJ Bush, D Foster, DW Eyre, EL Clark, N De Maio, LP Shaw, N Stoesser, ... Gigascience 9 (2), giaa007, 2020 | 158 | 2020 |
| Population, genetic, and antigenic diversity of the apicomplexan Eimeria tenella and their relevance to vaccine development DP Blake, EL Clark, SE Macdonald, V Thenmozhi, K Kundu, R Garg, ... Proceedings of the National Academy of Sciences 112 (38), E5343-E5350, 2015 | 155 | 2015 |
| ADGRE1 (EMR1, F4/80) is a rapidly-evolving gene expressed in mammalian monocyte-macrophages LA Waddell, L Lefevre, SJ Bush, A Raper, R Young, ZM Lisowski, ... Frontiers in immunology 9, 2246, 2018 | 143 | 2018 |
| An optimised protocol for molecular identification of Eimeria from chickens S Kumar, R Garg, A Moftah, EL Clark, SE Macdonald, AS Chaudhry, ... Veterinary parasitology 199 (1-2), 24-31, 2014 | 112 | 2014 |
| Cryptic Eimeria genotypes are common across the southern but not northern hemisphere EL Clark, SE Macdonald, V Thenmozhi, K Kundu, R Garg, S Kumar, ... International journal for parasitology 46 (9), 537, 2016 | 102 | 2016 |
| Insect endosymbionts: manipulators of insect herbivore trophic interactions? EL Clark, AJ Karley, SF Hubbard Protoplasma 244 (1), 25-51, 2010 | 99 | 2010 |
| Eimeria species occurrence varies between geographic regions and poultry production systems and may influence parasite genetic diversity BC Prakashbabu, V Thenmozhi, G Limon, K Kundu, S Kumar, R Garg, ... Veterinary parasitology 233, 62-72, 2017 | 87 | 2017 |
| An improved ovine reference genome assembly to facilitate in-depth functional annotation of the sheep genome KM Davenport, DM Bickhart, K Worley, SC Murali, M Salavati, EL Clark, ... Gigascience 11, giab096, 2022 | 85 | 2022 |
| Are Eimeria genetically diverse, and does it matter? EL Clark, FM Tomley, DP Blake Trends in Parasitology 33 (3), 231-241, 2017 | 78 | 2017 |
| The genomic architecture of mastitis resistance in dairy sheep G Banos, G Bramis, SJ Bush, EL Clark, MEB McCulloch, J Smith, ... BMC genomics 18 (1), 624, 2017 | 70 | 2017 |
| Occurrence of Eimeria species parasites on small-scale commercial chicken farms in Africa and indication of economic profitability KM Fornace, EL Clark, SE Macdonald, B Namangala, E Karimuribo, ... PLoS One 8 (12), e84254, 2013 | 59 | 2013 |
| Species-specific transcriptional regulation of genes involved in nitric oxide production and arginine metabolism in macrophages R Young, SJ Bush, L Lefevre, MEB McCulloch, ZM Lisowski, C Muriuki, ... Immunohorizons 2 (1), 27-37, 2018 | 50 | 2018 |
| VarGoats project: a dataset of 1159 whole-genome sequences to dissect Capra hircus global diversity L Denoyelle, E Talouarn, P Bardou, L Colli, A Alberti, C Danchin, ... Genetics Selection Evolution 53 (1), 86, 2021 | 48 | 2021 |
| Whole-genome sequence data suggest environmental adaptation of Ethiopian sheep populations P Wiener, C Robert, A Ahbara, M Salavati, A Abebe, A Kebede, D Wragg, ... Genome Biology and Evolution 13 (3), evab014, 2021 | 45 | 2021 |
| Empowering bioinformatics communities with Nextflow and nf-core BE Langer, A Amaral, MO Baudement, F Bonath, M Charles, PK Chitneedi, ... Genome Biology 26 (1), 228, 2025 | 40 | 2025 |
| Integration of quantitated expression estimates from polyA-selected and rRNA-depleted RNA-seq libraries SJ Bush, MEB McCulloch, KM Summers, DA Hume, EL Clark BMC bioinformatics 18 (1), 301, 2017 | 40 | 2017 |
| Elimination of reference mapping bias reveals robust immune related allele-specific expression in crossbred sheep M Salavati, SJ Bush, S Palma-Vera, MEB McCulloch, DA Hume, EL Clark Frontiers in genetics 10, 863, 2019 | 37 | 2019 |
| Species-specificity of transcriptional regulation and the response to lipopolysaccharide in mammalian macrophages SJ Bush, MEB McCulloch, ZM Lisowski, C Muriuki, EL Clark, R Young, ... Frontiers in Cell and Developmental Biology 8, 661, 2020 | 36 | 2020 |
