| Evaluation of FTIR spectroscopy as a diagnostic tool for lung cancer using sputum PD Lewis, KE Lewis, R Ghosal, S Bayliss, AJ Lloyd, J Wills, R Godfrey, ... BMC cancer 10, 1-10, 2010 | 261 | 2010 |
| PIRATE: A fast and scalable pangenomics toolbox for clustering diverged orthologues in bacteria SC Bayliss, HA Thorpe, NM Coyle, SK Sheppard, EJ Feil GigaScience 8 (10), giz119, 2019 | 253 | 2019 |
| Clonal differences in Staphylococcus aureus bacteraemia-associated mortality M Recker, M Laabei, MS Toleman, S Reuter, RB Saunderson, B Blane, ... Nature microbiology 2 (10), 1381-1388, 2017 | 157 | 2017 |
| Genome evolution and the emergence of pathogenicity in avian Escherichia coli L Mageiros, G Méric, SC Bayliss, J Pensar, B Pascoe, E Mourkas, ... Nature communications 12 (1), 765, 2021 | 140 | 2021 |
| The promise of whole genome pathogen sequencing for the molecular epidemiology of emerging aquaculture pathogens SC Bayliss, DW Verner-Jeffreys, KL Bartie, DM Aanensen, SK Sheppard, ... Frontiers in microbiology 8, 121, 2017 | 112 | 2017 |
| Gene pool transmission of multidrug resistance among Campylobacter from livestock, sewage and human disease E Mourkas, D Florez‐Cuadrado, B Pascoe, JK Calland, SC Bayliss, ... Environmental microbiology 21 (12), 4597-4613, 2019 | 97 | 2019 |
| Agricultural intensification and the evolution of host specialism in the enteric pathogen Campylobacter jejuni E Mourkas, AJ Taylor, G Méric, SC Bayliss, B Pascoe, L Mageiros, ... Proceedings of the National Academy of Sciences 117 (20), 11018-11028, 2020 | 92 | 2020 |
| Comparative Analyses of Selection Operating on Nontranslated Intergenic Regions of Diverse Bacterial Species HA Thorpe, SC Bayliss, LD Hurst, EJ Feil Genetics 206 (1), 363-376, 2017 | 91 | 2017 |
| Piggy: a rapid, large-scale pan-genome analysis tool for intergenic regions in bacteria HA Thorpe, SC Bayliss, SK Sheppard, EJ Feil GigaScience 7 (4), giy015, 2018 | 90 | 2018 |
| Genomic analysis of 495 vancomycin-resistant Enterococcus faecium reveals broad dissemination of a vanA plasmid in more than 19 clones from Copenhagen … M Pinholt, H Gumpert, S Bayliss, JB Nielsen, V Vorobieva, M Pedersen, ... Journal of Antimicrobial Chemotherapy 72 (1), 40-47, 2016 | 69 | 2016 |
| WGS of 1058 Enterococcus faecium from Copenhagen, Denmark, reveals rapid clonal expansion of vancomycin-resistant clone ST80 combined with widespread … M Pinholt, SC Bayliss, H Gumpert, P Worning, VVS Jensen, M Pedersen, ... Journal of Antimicrobial Chemotherapy 74 (7), 1776-1785, 2019 | 67 | 2019 |
| Machine learning to predict the source of campylobacteriosis using whole genome data N Arning, SK Sheppard, S Bayliss, DA Clifton, DJ Wilson PLoS genetics 17 (10), e1009436, 2021 | 52 | 2021 |
| Patterns of cross‐resistance and collateral sensitivity between clinical antibiotics and natural antimicrobials A Colclough, J Corander, S Sheppard, S Bayliss, M Vos Evolutionary Applications, 2019 | 51 | 2019 |
| Campylobacter jejuni genotypes are associated with post-infection irritable bowel syndrome in humans S Peters, B Pascoe, Z Wu, SC Bayliss, X Zeng, A Edwinson, ... Communications Biology 4 (1), 1015, 2021 | 50 | 2021 |
| Epistasis analysis uncovers hidden antibiotic resistance-associated fitness costs hampering the evolution of MRSA M Yokoyama, E Stevens, M Laabei, L Bacon, K Heesom, S Bayliss, N Ooi, ... Genome Biology 19 (1), 94, 2018 | 44 | 2018 |
| Transmission of Staphylococcus aureus from humans to green monkeys in The Gambia as revealed by whole-genome sequencing M Senghore, SC Bayliss, BA Kwambana-Adams, E Foster-Nyarko, ... Applied and environmental microbiology 82 (19), 5910-5917, 2016 | 42 | 2016 |
| Evidence of land‐sea transfer of the zoonotic pathogen Campylobacter to a wildlife marine sentinel species JL Baily, G Méric, S Bayliss, G Foster, SE Moss, E Watson, B Pascoe, ... Molecular ecology 24 (1), 208-221, 2015 | 42 | 2015 |
| Host ecology regulates interspecies recombination in bacteria of the genus Campylobacter E Mourkas, K Yahara, SC Bayliss, JK Calland, H Johansson, L Mageiros, ... Elife 11, e73552, 2022 | 38 | 2022 |
| The use of Oxford Nanopore native barcoding for complete genome assembly SC Bayliss, VL Hunt, M Yokoyama, HA Thorpe, EJ Feil GigaScience 6 (3), 1-6, 2017 | 35 | 2017 |
| Genomic epidemiology of Campylobacter jejuni associated with asymptomatic pediatric infection in the Peruvian Amazon B Pascoe, F Schiaffino, S Murray, G Méric, SC Bayliss, MD Hitchings, ... PLoS neglected tropical diseases 14 (8), e0008533, 2020 | 34 | 2020 |
Samuel K. SheppardDepartment of Biology, Oxford University, UKVerified email at biology.ox.ac.uk
