| dRep: a tool for fast and accurate genomic comparisons that enables improved genome recovery from metagenomes through de-replication MR Olm, CT Brown, B Brooks, JF Banfield The ISME journal 11 (12), 2864-2868, 2017 | 2590 | 2017 |
| Clades of huge phages from across Earth’s ecosystems B Al-Shayeb, R Sachdeva, LX Chen, F Ward, P Munk, A Devoto, ... Nature 578 (7795), 425-431, 2020 | 554 | 2020 |
| inStrain profiles population microdiversity from metagenomic data and sensitively detects shared microbial strains MR Olm, A Crits-Christoph, K Bouma-Gregson, BA Firek, MJ Morowitz, ... Nature Biotechnology 39 (6), 727-736, 2021 | 523 | 2021 |
| Measurement of bacterial replication rates in microbial communities CT Brown, MR Olm, BC Thomas, JF Banfield Nature biotechnology 34 (12), 1256-1263, 2016 | 442 | 2016 |
| Reporting guidelines for human microbiome research: the STORMS checklist C Mirzayi, A Renson, Genomic Standards Consortium, ... Nature medicine 27 (11), 1885-1892, 2021 | 405 | 2021 |
| Genome sequencing of sewage detects regionally prevalent SARS-CoV-2 variants A Crits-Christoph, RS Kantor, MR Olm, ON Whitney, B Al-Shayeb, YC Lou, ... MBio 12 (1), 2021 | 364 | 2021 |
| Strain-resolved analysis of hospital rooms and infants reveals overlap between the human and room microbiome B Brooks, MR Olm, BA Firek, R Baker, BC Thomas, MJ Morowitz, ... Nature communications 8 (1), 1814, 2017 | 244 | 2017 |
| Megaphages infect Prevotella and variants are widespread in gut microbiomes AE Devoto, JM Santini, MR Olm, K Anantharaman, P Munk, J Tung, ... Nature microbiology 4 (4), 693-700, 2019 | 222 | 2019 |
| Consistent metagenome-derived metrics verify and delineate bacterial species boundaries MR Olm, A Crits-Christoph, S Diamond, A Lavy, PB Matheus Carnevali, ... Msystems 5 (1), 10.1128/msystems. 00731-19, 2020 | 218 | 2020 |
| Necrotizing enterocolitis is preceded by increased gut bacterial replication, Klebsiella, and fimbriae-encoding bacteria MR Olm, N Bhattacharya, A Crits-Christoph, BA Firek, R Baker, YS Song, ... Science advances 5 (12), eaax5727, 2019 | 210 | 2019 |
| Ultra-deep sequencing of Hadza hunter-gatherers recovers vanishing gut microbes MM Carter, MR Olm, BD Merrill, D Dahan, S Tripathi, SP Spencer, ... Cell, 2023 | 193* | 2023 |
| Robust variation in infant gut microbiome assembly across a spectrum of lifestyles MR Olm, D Dahan, MM Carter, BD Merrill, FB Yu, S Jain, X Meng, ... Science 376 (6598), 1220-1223, 2022 | 180 | 2022 |
| Identical bacterial populations colonize premature infant gut, skin, and oral microbiomes and exhibit different in situ growth rates MR Olm, CT Brown, B Brooks, B Firek, R Baker, D Burstein, K Soenjoyo, ... Genome research 27 (4), 601-612, 2017 | 143 | 2017 |
| The developing premature infant gut microbiome is a major factor shaping the microbiome of neonatal intensive care unit rooms B Brooks, MR Olm, BA Firek, R Baker, D Geller-McGrath, SR Reimer, ... Microbiome 6 (1), 112, 2018 | 116 | 2018 |
| Impacts of microbial assemblage and environmental conditions on the distribution of anatoxin-a producing cyanobacteria within a river network K Bouma-Gregson, MR Olm, AJ Probst, K Anantharaman, ME Power, ... The ISME journal 13 (6), 1618-1634, 2019 | 101 | 2019 |
| Machine learning leveraging genomes from metagenomes identifies influential antibiotic resistance genes in the infant gut microbiome SF Rahman, MR Olm, MJ Morowitz, JF Banfield MSystems 3 (1), 10.1128/msystems. 00123-17, 2018 | 98 | 2018 |
| Infant gut strain persistence is associated with maternal origin, phylogeny, and traits including surface adhesion and iron acquisition YC Lou, MR Olm, S Diamond, A Crits-Christoph, BA Firek, R Baker, ... Cell Reports Medicine 2 (9), 2021 | 94 | 2021 |
| Hydrogen-based metabolism as an ancestral trait in lineages sibling to the Cyanobacteria PB Matheus Carnevali, F Schulz, CJ Castelle, RS Kantor, PM Shih, ... Nature communications 10 (1), 463, 2019 | 81 | 2019 |
| Soil bacterial populations are shaped by recombination and gene-specific selection across a grassland meadow A Crits-Christoph, MR Olm, S Diamond, K Bouma-Gregson, JF Banfield The ISME journal 14 (7), 1834-1846, 2020 | 78 | 2020 |
| Genome-resolved metagenomics of eukaryotic populations during early colonization of premature infants and in hospital rooms MR Olm, PT West, B Brooks, BA Firek, R Baker, MJ Morowitz, JF Banfield Microbiome 7 (1), 26, 2019 | 73 | 2019 |
Jillian BANFIELDUniversity of California BerkeleyVerified email at berkeley.edu
