| Discordant congenital Zika syndrome twins show differential in vitro viral susceptibility of neural progenitor cells LC Caires-Júnior, E Goulart, US Melo, BHS Araujo, L Alvizi, ... Nature communications 9 (1), 475, 2018 | 140* | 2018 |
| The human integrator complex facilitates transcriptional elongation by endonucleolytic cleavage of nascent transcripts F Beckedorff, E Blumenthal, L Ferreira daSilva, Y Aoi, PR Cingaram, ... Cell reports 32 (3), 2020 | 123 | 2020 |
| Schistosoma mansoni egg, adult male and female comparative gene expression analysis and identification of novel genes by RNA-Seq L Anderson, MS Amaral, F Beckedorff, LF Silva, B Dazzani, KC Oliveira, ... PLoS neglected tropical diseases 9 (12), e0004334, 2015 | 99 | 2015 |
| Deciphering the impact of genomic variation on function Code of Conduct Committee (alphabetical by last name) Cody Sarah 33 Farrell ... Nature 633 (8028), 47-57, 2024 | 80* | 2024 |
| The Schistosoma mansoni genome encodes thousands of long non-coding RNAs predicted to be functional at different parasite life-cycle stages EJR Vasconcelos, LF daSilva, DS Pires, GM Lavezzo, ASA Pereira, ... Scientific Reports 7 (1), 10508, 2017 | 60 | 2017 |
| Designing synthetic regulatory elements using the generative AI framework DNA-Diffusion LF DaSilva, S Senan, JF Kribelbauer-Swietek, ZM Patel, LK Louis, ... Nature Genetics, 1-15, 2025 | 56* | 2025 |
| Integrator enforces the fidelity of transcriptional termination at protein-coding genes LF Dasilva, E Blumenthal, F Beckedorff, PR Cingaram, ... Science advances 7 (45), eabe3393, 2021 | 50 | 2021 |
| HIPSTR and thousands of lncRNAs are heterogeneously expressed in human embryos, primordial germ cells and stable cell lines D Yunusov, L Anderson, LF DaSilva, J Wysocka, T Ezashi, RM Roberts, ... Scientific Reports 6 (1), 32753, 2016 | 43 | 2016 |
| High hydrostatic pressure activates gene expression that leads to ethanol production enhancement in a Saccharomyces cerevisiae distillery strain F Bravim, SI Lippman, LF Da Silva, DT Souza, AAR Fernandes, ... Applied microbiology and biotechnology 97 (5), 2093-2107, 2013 | 33 | 2013 |
| Inhibition of histone methyltransferase EZH2 in Schistosoma mansoni in vitro by GSK343 reduces egg laying and decreases the expression of genes implicated in … ASA Pereira, MS Amaral, EJR Vasconcelos, DS Pires, H Asif, LF daSilva, ... PLoS neglected tropical diseases 12 (10), e0006873, 2018 | 31 | 2018 |
| Gene editing without ex vivo culture evades genotoxicity in human hematopoietic stem cells J Zeng, MA Nguyen, P Liu, LF Da Silva, S Levesque, LY Lin, DG Justus, ... Cell Stem Cell 32 (2), 191-208. e11, 2025 | 29 | 2025 |
| Histone deacetylase inhibition modulates histone acetylation at gene promoter regions and affects genome-wide gene transcription in Schistosoma mansoni L Anderson, MR Gomes, LF DaSilva, ASA Pereira, MM Mourao, C Romier, ... PLOS Neglected Tropical Diseases 11 (4), e0005539, 2017 | 28 | 2017 |
| PVT1 signals an androgen-dependent transcriptional repression program in prostate cancer cells and a set of the repressed genes predicts high-risk tumors A Videira, FC Beckedorff, LF daSilva, S Verjovski-Almeida Cell Communication and Signaling 19 (1), 5, 2021 | 23 | 2021 |
| BCL11A+ 58/+ 55 enhancer-editing facilitates HSPC engraftment and HbF induction in rhesus macaques conditioned with a CD45 antibody-drug conjugate S Demirci, J Zeng, R Palchaudhuri, C Wu, DM Abraham, TB Hayal, ... Cell Stem Cell 32 (2), 209-226. e8, 2025 | 18 | 2025 |
| Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes EJR Vasconcelos, VC Mesel, LF daSilva, DS Pires, GM Lavezzo, ... Database 2018, bay068, 2018 | 17 | 2018 |
| High hydrostatic pressure activates transcription factors involved in Saccharomyces cerevisiae stress tolerance F Bravim, L F. da Silva, D T. Souza, S I. Lippman, J R. Broach, ... Current pharmaceutical biotechnology 13 (15), 2712-2720, 2012 | 16 | 2012 |
| Uso de pesticidas na agricultura-Análise da prática na cidade de Ibirité/MG VA Fernandes, LF Silva, TRR Mesquita, LSA Capettini, ALP Rodrigues, ... Scientia Plena 8 (3 (a)), 2012 | 16 | 2012 |
| Chromatin landscape distinguishes the genomic loci of hundreds of androgen-receptor-associated LincRNAs from the loci of non-associated LincRNAs LF DaSilva, FC Beckedorff, AC Ayupe, MS Amaral, V Mesel, A Videira, ... Frontiers in genetics 9, 132, 2018 | 15 | 2018 |
| Metabolomic profiling of breast cancer patients undergoing neoadjuvant chemotherapy for predicting disease-free and overall survival MCR Talarico, S Derchain, LF da Silva, ML Sforça, SA Rocco, ... International Journal of Molecular Sciences 25 (16), 8639, 2024 | 5 | 2024 |
| Scalable assessment of genome editing off-targets associated with genetic variants J Lin, MA Nguyen, LY Lin, J Zeng, A Verma, NR Neri, LF da Silva, A Mucci, ... bioRxiv, 2024.07. 24.605019, 2024 | 3 | 2024 |
