| Reduced thermal tolerance in a coral carrying CRISPR-induced mutations in the gene for a heat-shock transcription factor PA Cleves, AI Tinoco, J Bradford, D Perrin, LK Bay, JR Pringle Proceedings of the National Academy of Sciences 117 (46), 28899-28905, 2020 | 126 | 2020 |
| A benchmark of computational CRISPR-Cas9 guide design methods J Bradford, D Perrin PLOS Computational Biology 15 (8), e1007274, 2019 | 51 | 2019 |
| A community effort to optimize sequence-based deep learning models of gene regulation AM Rafi, D Nogina, D Penzar, D Lee, D Lee, N Kim, S Kim, D Kim, Y Shin, ... Nature biotechnology, 1-11, 2024 | 32 | 2024 |
| Role of the bicarbonate transporter SLC4γ in stony-coral skeleton formation and evolution AI Tinoco, LMY Mitchison-Field, J Bradford, C Renicke, D Perrin, LK Bay, ... Proceedings of the National Academy of Sciences 120 (24), e2216144120, 2023 | 18 | 2023 |
| Improving CRISPR guide design with consensus approaches J Bradford, D Perrin BMC genomics 20 (Suppl 9), 931, 2019 | 17 | 2019 |
| Rapid Whole-Genome Identification of High Quality CRISPR Guide RNAs with the Crackling Method J Bradford, T Chappell, D Perrin The CRISPR Journal 5 (3), 410-421, 2022 | 6 | 2022 |
| Fast and scalable off-target assessment for CRISPR guide RNAs using partial matches C Schmitz, J Bradford, R Salomone, D Perrin 2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2024 | 4 | 2024 |
| Leveraging uncertainty quantification to optimise CRISPR guide RNA selection C Schmitz, J Bradford, R Salomone, D Perrin Biology Methods and Protocols, bpaf054, 2025 | 3 | 2025 |
| Rapid detection of safe and efficient gene editing targets across entire genomes J Bradford Queensland University of Technology, 2022 | 1 | 2022 |
| Democratising high performance computing for bioinformatics through serverless cloud computing: A case study on CRISPR-Cas9 guide RNA design with Crackling Cloud J Bradford, D Joy, M Winsen, N Meurant, M Wilkins, LOW Wilson, ... PLOS Computational Biology 21 (12), e1013819, 2025 | | 2025 |
| CRISPR-DA: Adapting CRISPR gRNA design for detection assays C Schmitz, J Bradford, D Perrin bioRxiv, 2025.12. 05.692701, 2025 | | 2025 |
| Event-driven high-performance cloud computing for CRISPR-Cas9 guide RNA design D Joy, J Bradford WHPC@SC24: 20th International Women in HPC Workshop, 2024 | | 2024 |
| Crackling Cloud: an event-driven, cloud-based CRISPR-Cas9 guide RNA design tool J Bradford, D Joy, M Winsen, N Meurant, M Wilkins, L Wilson, D Bauer, ... bioRxiv, 2024.12. 04.626718, 2024 | | 2024 |
| Comparison of independent, participant-led, high-resolution studies of pitch-matching in post-lingual single-sided cochlear implant recipients D Lovell, W Martens, J Bradford, A Bradley, AM Crowe, M McKague, ... Journal of the Acoustical Society of America 154 (4 Supplement), Article …, 2023 | | 2023 |
Dimitri PerrinQueensland University of TechnologyVerified email at qut.edu.au
