| The human tumor atlas network: charting tumor transitions across space and time at single-cell resolution O Rozenblatt-Rosen, A Regev, P Oberdoerffer, T Nawy, A Hupalowska, ... Cell 181 (2), 236-249, 2020 | 569 | 2020 |
| SHIFT: speedy histological-to-immunofluorescent translation of a tumor signature enabled by deep learning EA Burlingame, M McDonnell, GF Schau, G Thibault, C Lanciault, ... Scientific reports 10 (1), 17507, 2020 | 81 | 2020 |
| MITI minimum information guidelines for highly multiplexed tissue images D Schapiro, C Yapp, A Sokolov, SM Reynolds, YA Chen, D Sudar, Y Xie, ... Nature methods 19 (3), 262-267, 2022 | 72 | 2022 |
| SHIFT: speedy histopathological-to-immunofluorescent translation of whole slide images using conditional generative adversarial networks EA Burlingame, AA Margolin, JW Gray, YH Chang Proceedings of SPIE--the International Society for Optical Engineering 10581 …, 2018 | 66 | 2018 |
| Relevance of circulating hybrid cells as a non-invasive biomarker for myriad solid tumors MS Dietz, TL Sutton, BS Walker, CE Gast, L Zarour, SK Sengupta, ... Scientific Reports 11 (1), 13630, 2021 | 60 | 2021 |
| An omic and multidimensional spatial atlas from serial biopsies of an evolving metastatic breast cancer BE Johnson, AL Creason, JM Stommel, JM Keck, S Parmar, CB Betts, ... Cell Reports Medicine 3 (2), 2022 | 58 | 2022 |
| RESTORE: Robust intEnSiTy nORmalization mEthod for multiplexed imaging YH Chang, K Chin, G Thibault, J Eng, E Burlingame, JW Gray Communications biology 3 (1), 111, 2020 | 38 | 2020 |
| Toward reproducible, scalable, and robust data analysis across multiplex tissue imaging platforms EA Burlingame, J Eng, G Thibault, K Chin, JW Gray, YH Chang Cell reports methods 1 (4), 2021 | 35 | 2021 |
| 3D multiplexed tissue imaging reconstruction and optimized region of interest (ROI) selection through deep learning model of channels embedding E Burlingame, L Ternes, JR Lin, YA Chen, EN Kim, JW Gray, YH Chang Frontiers in Bioinformatics 3, 1275402, 2023 | 11 | 2023 |
| A community-based approach to image analysis of cells, tissues and tumors JC Vizcarra, EA Burlingame, CB Hug, Y Goltsev, BS White, DR Tyson, ... Computerized Medical Imaging and Graphics 95, 102013, 2022 | 9 | 2022 |
| Multiplex imaging of localized prostate tumors reveals altered spatial organization of AR-positive cells in the microenvironment Ç Ak, Z Sayar, G Thibault, EA Burlingame, MJ Kuykendall, J Eng, ... iScience 27 (9), 2024 | 8 | 2024 |
| Predicting primary site of secondary liver cancer with a neural estimator of metastatic origin GF Schau, EA Burlingame, G Thibault, T Anekpuritanang, Y Wang, ... Journal of Medical Imaging 7 (1), 012706-012706, 2020 | 8 | 2020 |
| SlideQC: An AI-based tool for automated quality control of whole-slide digital pathology images D Rodrigues, S Reinhard, T Waldburger, D Martin, S Couto, I Zlobec, ... Cancer Research 83 (7_Supplement), 5442-5442, 2023 | 7 | 2023 |
| DISSECT: DISentangle SharablE ConTent for multimodal integration and crosswise-mapping G Schau, E Burlingame, YH Chang 2020 59th IEEE Conference on Decision and Control (CDC), 5092-5097, 2020 | 5 | 2020 |
| Translation of images of stained biological material YH Chang, E Burlingame, G Schau, JW Gray US Patent 12,327,298, 2025 | | 2025 |
| Extending ENPP3 expression inference from tissue microarrays to whole tissue sections: building a case for automated patient enrichment and IHC scoring EA Burlingame, F Koochaki, TS Yao, S Kunnath-Velayudhan, C Parmar, ... Cancer Research 85 (8_Supplement_1), 2445-2445, 2025 | | 2025 |
| Multiplex imaging of localized prostate tumors reveals changes in mast cell type composition and spatial organization of AR-positive cells in the tumor microenvironment C Ak, Z Sayar, G Thibault, EA Burlingame, J Eng, A Chitsazan, AC Adey, ... bioRxiv, 2023.08. 18.553854, 2023 | | 2023 |
| Transfer Learning for Inference of Metastatic Origin from Whole Slide Histology GF Schau, H Ghani, EA Burlingame, G Thibault, JW Gray, C Corless, ... bioRxiv, 2021.04. 21.440864, 2021 | | 2021 |
Young Hwan ChangAssociate Professor, Dept. of Biomedical Engineering, Oregon Health and Science UniversityVerified email at ohsu.edu
