| EasyAmplicon: An easy‐to‐use, open‐source, reproducible, and community‐based pipeline for amplicon data analysis in microbiome research YX Liu, L Chen, T Ma, X Li, M Zheng, X Zhou, L Chen, X Qian, J Xi, H Lu, ... Imeta 2 (1), e83, 2023 | 197 | 2023 |
| Spatial distribution and abundances of ammonia-oxidizing archaea (AOA) and ammonia-oxidizing bacteria (AOB) in mangrove sediments M Li, H Cao, Y Hong, JD Gu Applied microbiology and biotechnology 89 (4), 1243-1254, 2011 | 186 | 2011 |
| Diversity and abundance of ammonia-oxidizing archaea and bacteria in polluted mangrove sediment H Cao, M Li, Y Hong, JD Gu Systematic and applied microbiology 34 (7), 513-523, 2011 | 167 | 2011 |
| Residence of habitat-specific anammox bacteria in the deep-sea subsurface sediments of the South China Sea: analyses of marker gene abundance with physical chemical parameters YG Hong, M Li, H Cao, JD Gu Microbial ecology 62 (1), 36-47, 2011 | 129 | 2011 |
| Global ecological pattern of ammonia-oxidizing archaea H Cao, JC Auguet, JD Gu PloS one 8 (2), e52853, 2013 | 122 | 2013 |
| Seasonal dynamics of anammox bacteria in estuarial sediment of the Mai Po Nature Reserve revealed by analyzing the 16S rRNA and hydrazine oxidoreductase (hzo) genes M Li, H Cao, YG Hong, JD Gu Microbes and Environments 26 (1), 15-22, 2011 | 120 | 2011 |
| HMD-ARG: hierarchical multi-task deep learning for annotating antibiotic resistance genes Y Li, Z Xu, W Han, H Cao, R Umarov, A Yan, M Fan, H Chen, CM Duarte, ... Microbiome 9 (1), 40, 2021 | 110 | 2021 |
| Diversity and abundance of ammonia-oxidizing prokaryotes in sediments from the coastal Pearl River estuary to the South China Sea H Cao, Y Hong, M Li, JD Gu Antonie Van Leeuwenhoek 100 (4), 545-556, 2011 | 110 | 2011 |
| Mangrove trees affect the community structure and distribution of anammox bacteria at an anthropogenic-polluted mangrove in the Pearl River Delta reflected by 16S rRNA and … M Li, YG Hong, HL Cao, JD Gu Ecotoxicology 20 (8), 1780-1790, 2011 | 99 | 2011 |
| Community shift of ammonia-oxidizing bacteria along an anthropogenic pollution gradient from the Pearl River Delta to the South China Sea H Cao, Y Hong, M Li, JD Gu Applied microbiology and biotechnology 94 (1), 247-259, 2012 | 91 | 2012 |
| Comparative genome and transcriptome analysis reveals distinctive surface characteristics and unique physiological potentials of Pseudomonas aeruginosa ATCC … H Cao, Y Lai, S Bougouffa, Z Xu, A Yan BMC genomics 18 (1), 459, 2017 | 83 | 2017 |
| Native CRISPR-Cas-mediated genome editing enables dissecting and sensitizing clinical multidrug-resistant P. aeruginosa Z Xu, M Li, Y Li, H Cao, L Miao, Z Xu, Y Higuchi, S Yamasaki, K Nishino, ... Cell reports 29 (6), 1707-1717. e3, 2019 | 79 | 2019 |
| Microbial sulfur cycle in two hydrothermal chimneys on the Southwest Indian Ridge H Cao, Y Wang, OO Lee, X Zeng, Z Shao, PY Qian MBio 5 (1), 10.1128/mbio. 00980-13, 2014 | 78 | 2014 |
| Rare events of intragenus and intraspecies horizontal transfer of the 16S rRNA gene RM Tian, L Cai, WP Zhang, HL Cao, PY Qian Genome biology and Evolution 7 (8), 2310-2320, 2015 | 77 | 2015 |
| Harnessing the CRISPR-Cas systems to combat antimicrobial resistance C Duan, H Cao, LH Zhang, Z Xu Frontiers in Microbiology 12, 716064, 2021 | 74 | 2021 |
| Community Structures and Distribution of Anaerobic Ammonium Oxidizing and nirS-Encoding Nitrite-Reducing Bacteria in Surface Sediments of the South China Sea M Li, Y Hong, H Cao, JD Gu Microbial ecology 66 (2), 281-296, 2013 | 70 | 2013 |
| IncX3 Epidemic Plasmid Carrying blaNDM-5 in Escherichia coli from Swine in Multiple Geographic Areas in China PL Ho, Y Wang, MCJ Liu, ELY Lai, PYT Law, H Cao, KH Chow Antimicrobial Agents and Chemotherapy 62 (3), 10.1128/aac. 02295-17, 2018 | 60 | 2018 |
| Species sorting during biofilm assembly by artificial substrates deployed in a cold seep system WP Zhang, Y Wang, RM Tian, S Bougouffa, B Yang, HL Cao, G Zhang, ... Scientific reports 4 (1), 6647, 2014 | 60 | 2014 |
| Sharing of antimicrobial resistance genes between humans and food animals H Cao, S Bougouffa, TJ Park, A Lau, MK Tong, KH Chow, PL Ho MSystems 7 (6), e00775-22, 2022 | 56 | 2022 |
| Metabolic labeling of pseudaminic acid-containing glycans on bacterial surfaces G Andolina, R Wei, H Liu, Q Zhang, X Yang, H Cao, S Chen, A Yan, XD Li, ... ACS Chemical Biology 13 (10), 3030-3037, 2018 | 49 | 2018 |
Jean-Christophe AuguetCNRS researcher, MARBEC UMR9190, University of MontpellierVerified email at cnrs.fr
