| CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes DH Parks, M Imelfort, CT Skennerton, P Hugenholtz, GW Tyson Genome research 25 (7), 1043-1055, 2015 | 11864 | 2015 |
| STAMP: statistical analysis of taxonomic and functional profiles DH Parks, GW Tyson, P Hugenholtz, RG Beiko Bioinformatics 30 (21), 3123-3124, 2014 | 4233 | 2014 |
| Community structure and metabolism through reconstruction of microbial genomes from the environment GW Tyson, J Chapman, P Hugenholtz, EE Allen, RJ Ram, PM Richardson, ... Nature 428 (6978), 37-43, 2004 | 3024 | 2004 |
| Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea RM Bowers, NC Kyrpides, R Stepanauskas, M Harmon-Smith, D Doud, ... Nature biotechnology 35 (8), 725-731, 2017 | 2346 | 2017 |
| Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life DH Parks, C Rinke, M Chuvochina, PA Chaumeil, BJ Woodcroft, ... Nature microbiology 2 (11), 1533-1542, 2017 | 1938 | 2017 |
| Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes M Albertsen, P Hugenholtz, A Skarshewski, KL Nielsen, GW Tyson, ... Nature biotechnology 31 (6), 533-538, 2013 | 1466 | 2013 |
| Anaerobic oxidation of methane coupled to nitrate reduction in a novel archaeal lineage MF Haroon, S Hu, Y Shi, M Imelfort, J Keller, P Hugenholtz, Z Yuan, ... Nature 500 (7464), 567-570, 2013 | 1462 | 2013 |
| CheckM2: a rapid, scalable and accurate tool for assessing microbial genome quality using machine learning A Chklovski, DH Parks, BJ Woodcroft, GW Tyson Nature methods 20 (8), 1203-1212, 2023 | 1059 | 2023 |
| Microbial community gene expression in ocean surface waters J Frias-Lopez, Y Shi, GW Tyson, ML Coleman, SC Schuster, ... Proceedings of the National Academy of Sciences 105 (10), 3805-3810, 2008 | 958 | 2008 |
| Community proteomics of a natural microbial biofilm RJ Ram, NC VerBerkmoes, MP Thelen, GW Tyson, BJ Baker, RC Blake, ... Science 308 (5730), 1915-1920, 2005 | 862 | 2005 |
| Methane metabolism in the archaeal phylum Bathyarchaeota revealed by genome-centric metagenomics PN Evans, DH Parks, GL Chadwick, SJ Robbins, VJ Orphan, SD Golding, ... Science 350 (6259), 434-438, 2015 | 838 | 2015 |
| Metagenomics P Hugenholtz, GW Tyson Nature 455 (7212), 481-483, 2008 | 661 | 2008 |
| An evolving view of methane metabolism in the Archaea PN Evans, JA Boyd, AO Leu, BJ Woodcroft, DH Parks, P Hugenholtz, ... Nature Reviews Microbiology 17 (4), 219-232, 2019 | 618 | 2019 |
| Methylotrophic methanogenesis discovered in the archaeal phylum Verstraetearchaeota I Vanwonterghem, PN Evans, DH Parks, PD Jensen, BJ Woodcroft, ... Nature microbiology 1 (12), 1-9, 2016 | 613 | 2016 |
| Host-linked soil viral ecology along a permafrost thaw gradient JB Emerson, S Roux, JR Brum, B Bolduc, BJ Woodcroft, HB Jang, ... Nature microbiology 3 (8), 870-880, 2018 | 602 | 2018 |
| Methane dynamics regulated by microbial community response to permafrost thaw CK McCalley, BJ Woodcroft, SB Hodgkins, RA Wehr, EH Kim, R Mondav, ... Nature 514 (7523), 478-481, 2014 | 482 | 2014 |
| Genome-centric view of carbon processing in thawing permafrost BJ Woodcroft, CM Singleton, JA Boyd, PN Evans, JB Emerson, ... Nature 560 (7716), 49-54, 2018 | 472 | 2018 |
| Linking microbial community structure, interactions and function in anaerobic digesters using new molecular techniques I Vanwonterghem, PD Jensen, DP Ho, DJ Batstone, GW Tyson Current opinion in biotechnology 27, 55-64, 2014 | 450 | 2014 |
| Investigation of Candidate Division TM7, a Recently Recognized Major Lineage of the Domain Bacteria with No Known Pure-Culture Representatives P Hugenholtz, GW Tyson, RI Webb, AM Wagner, LL Blackall Applied and environmental microbiology 67 (1), 411-419, 2001 | 433 | 2001 |
| Shining a light on dark sequencing: characterising errors in Ion Torrent PGM data LM Bragg, G Stone, MK Butler, P Hugenholtz, GW Tyson PLoS computational biology 9 (4), e1003031, 2013 | 431 | 2013 |
Philip HugenholtzAustralian Centre for Ecogenomics, SCMB, The University of QueenslandVerified email at uq.edu.au
