| An integrated encyclopedia of DNA elements in the human genome ENCODE Project Consortium Nature, 2012 | 18936 | 2012 |
| Annotation of functional variation in personal genomes using RegulomeDB AP Boyle, EL Hong, M Hariharan, Y Cheng, MA Schaub, M Kasowski, ... Genome Research 22 (9), 1790-1797, 2012 | 3178 | 2012 |
| A comparative encyclopedia of DNA elements in the mouse genome F Yue, Y Cheng, A Breschi, J Vierstra, W Wu, T Ryba, R Sandstrom, Z Ma, ... Nature 515 (7527), 355-364, 2014 | 2184 | 2014 |
| Expanded encyclopaedias of DNA elements in the human and mouse genomes JE Moore, MJ Purcaro, HE Pratt, CB Epstein, N Shoresh, J Adrian, T Kawli, ... Nature 583 (7818), 699-710, 2020 | 2045 | 2020 |
| The ENCODE blacklist: identification of problematic regions of the genome HM Amemiya, A Kundaje, AP Boyle Scientific reports 9 (1), 9354, 2019 | 1920 | 2019 |
| High-resolution mapping and characterization of open chromatin across the genome AP Boyle, S Davis, HP Shulha, P Meltzer, EH Margulies, Z Weng, ... Cell 132 (2), 311-322, 2008 | 1879 | 2008 |
| Architecture of the human regulatory network derived from ENCODE data MB Gerstein, A Kundaje, M Hariharan, SG Landt, KK Yan, C Cheng, ... Nature 489 (7414), 91-100, 2012 | 1776 | 2012 |
| A user's guide to the encyclopedia of DNA elements (ENCODE) RM Myers, J Stamatoyannopoulos, M Snyder, I Dunham, RC Hardison, ... PLoS Biology 9 (4), e1001046, 2011 | 1551 | 2011 |
| Personal Omics Profiling Reveals Dynamic Molecular and Medical Phenotypes R Chen, GI Mias, J Li-Pook-Than, L Jiang, HYK Lam, R Chen, E Miriami, ... Cell 148 (6), 1293-1307, 2012 | 1495 | 2012 |
| Linking disease associations with regulatory information in the human genome MA Schaub, AP Boyle, A Kundaje, S Batzoglou, M Snyder Genome Research 22 (9), 1748-1759, 2012 | 957 | 2012 |
| Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity L Song, Z Zhang, LL Grasfeder, AP Boyle, PG Giresi, BK Lee, ... Genome research 21 (10), 1757-1767, 2011 | 666 | 2011 |
| F-Seq: a feature density estimator for high-throughput sequence tags AP Boyle, J Guinney, GE Crawford, TS Furey Bioinformatics 24 (21), 2537-2538, 2008 | 469 | 2008 |
| High-resolution genome-wide in vivo footprinting of diverse transcription factors in human cells AP Boyle, L Song, BK Lee, D London, D Keefe, E Birney, VR Iyer, ... Genome research 21 (3), 456-464, 2011 | 431 | 2011 |
| Extensive Variation in Chromatin States Across Humans M Kasowski, S Kyriazopoulou-Panagiotopoulou, F Grubert, JB Zaugg, ... Science 342 (6159), 750-752, 2013 | 430 | 2013 |
| Heritable individual-specific and allele-specific chromatin signatures in humans R McDaniell, BK Lee, L Song, Z Liu, AP Boyle, MR Erdos, LJ Scott, ... Science 328 (5975), 235-239, 2010 | 388 | 2010 |
| Principles of regulatory information conservation between mouse and human Y Cheng, Z Ma, BH Kim, W Wu, P Cayting, AP Boyle, V Sundaram, X Xing, ... Nature 515 (7527), 371-375, 2014 | 331 | 2014 |
| Comparative analysis of regulatory information and circuits across distant species AP Boyle, CL Araya, C Brdlik, P Cayting, C Cheng, Y Cheng, K Gardner, ... Nature 512 (7515), 453-456, 2014 | 250 | 2014 |
| Global epigenomic analysis of primary human pancreatic islets provides insights into type 2 diabetes susceptibility loci ML Stitzel, P Sethupathy, DS Pearson, PS Chines, L Song, MR Erdos, ... Cell metabolism 12 (5), 443-455, 2010 | 239 | 2010 |
| Sushi. R: flexible, quantitative and integrative genomic visualizations for publication-quality multi-panel figures DH Phanstiel, AP Boyle, CL Araya, MP Snyder Bioinformatics 30 (19), 2808-2810, 2014 | 215 | 2014 |
| Perspectives on ENCODE MP Snyder, TR Gingeras, JE Moore, Z Weng, MB Gerstein, B Ren, ... Nature 583 (7818), 693-698, 2020 | 174* | 2020 |
Michael SnyderStanford UniversityVerified email at stanford.edu
