| Cotranscriptional folding of a riboswitch at nucleotide resolution KE Watters, EJ Strobel, AM Yu, JT Lis, JB Lucks Nature structural & molecular biology 23 (12), 1124-1131, 2016 | 219 | 2016 |
| High-throughput determination of RNA structures EJ Strobel, AM Yu, JB Lucks Nature Reviews Genetics 19 (10), 615-634, 2018 | 213 | 2018 |
| The SLE transcriptome exhibits evidence of chronic endotoxin exposure and has widespread dysregulation of non-coding and coding RNAs L Shi, Z Zhang, AM Yu, W Wang, Z Wei, E Akhter, K Maurer, PC Reis, ... PloS one 9 (5), e93846, 2014 | 160 | 2014 |
| Characterizing RNA structures in vitro and in vivo with selective 2′-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq) KE Watters, MY Angela, EJ Strobel, AH Settle, JB Lucks Methods 103, 34-48, 2016 | 106 | 2016 |
| Computationally reconstructing cotranscriptional RNA folding from experimental data reveals rearrangement of non-native folding intermediates MY Angela, PM Gasper, L Cheng, LB Lai, S Kaur, V Gopalan, AA Chen, ... Molecular cell 81 (4), 870-883. e10, 2021 | 92* | 2021 |
| Nanopore sequencing in microgravity ABR McIntyre, L Rizzardi, AM Yu, N Alexander, GL Rosen, DJ Botkin, ... npj Microgravity 2 (1), 1-9, 2016 | 86 | 2016 |
| Cotranscriptional RNA strand exchange underlies the gene regulation mechanism in a purine-sensing transcriptional riboswitch L Cheng, EN White, NL Brandt, AM Yu, AA Chen, JB Lucks Nucleic Acids Research 50 (21), 12001-12018, 2022 | 36 | 2022 |
| SnapShot: RNA structure probing technologies PD Carlson, ME Evans, MY Angela, EJ Strobel, JB Lucks Cell 175 (2), 600-600. e1, 2018 | 19 | 2018 |
| The anticancer compound JTE-607 reveals hidden sequence specificity of the mRNA 3′ processing machinery L Liu, AM Yu, X Wang, LV Soles, X Teng, Y Chen, Y Yoon, KSK Sarkan, ... Nature structural & molecular biology 30 (12), 1947-1957, 2023 | 12 | 2023 |
| A nuclear RNA degradation code is recognized by PAXT for eukaryotic transcriptome surveillance LV Soles, L Liu, X Zou, Y Yoon, S Li, L Tian, M Valdez, AM Yu, H Yin, W Li, ... Molecular Cell 85 (8), 1575-1588. e9, 2025 | 11 | 2025 |
| The effect of pseudoknot base pairing on cotranscriptional structural switching of the fluoride riboswitch LM Hertz, EN White, K Kuznedelov, L Cheng, AM Yu, R Kakkaramadam, ... Nucleic acids research 52 (8), 4466-4482, 2024 | 9 | 2024 |
| Estimating RNA structure chemical probing reactivities from reverse transcriptase stops and mutations AM Yu, ME Evans, JB Lucks BioRxiv, 292532, 2018 | 9 | 2018 |
| Tracking RNA structures as RNAs transit through the cell AM Yu, JB Lucks Nature Structural & Molecular Biology 26 (4), 256-257, 2019 | 6 | 2019 |
| DUETT quantitatively identifies known and novel events in nascent RNA structural dynamics from chemical probing data AY Xue, AM Yu, JB Lucks, N Bagheri Bioinformatics 35 (24), 5103-5112, 2019 | 4 | 2019 |
| Nanopore sequencing in microgravity. NPJ Microgravity. 2016; 2: 16035 ABR McIntyre, L Rizzardi, AM Yu, N Alexander, GL Rosen, DJ Botkin | 4 | 2016 |
| A nuclear RNA degradation code for eukaryotic transcriptome surveillance LV Soles, L Liu, X Zou, Y Yoon, S Li, L Tian, MC Valdez, A Yu, H Yin, W Li, ... bioRxiv, 2024.07. 23.604837, 2024 | 3 | 2024 |
| Efficient digest of high-throughput sequencing data in a reproducible report Z Zhang, J Leipzig, A Sasson, AM Yu, JC Perin, HM Xie, M Sarmady, ... BMC bioinformatics 14 (Suppl 11), S3, 2013 | 2 | 2013 |
| Predicting Drug Interactions and Mutagenicity with Ensemble Classifiers on Subgraphs of Molecules A Schaumberg, A Yu, T Koshi, X Zong, S Rayadhurgam arXiv preprint arXiv:1601.07233, 2016 | 1 | 2016 |
| Engineered RNA sensors for tuberculosis detection: RNA nanotechnology GC Fonseca, JO Cardenas, AM Yu Nature Chemistry, 1-3, 2025 | | 2025 |
| Massively parallel assay of human splice variants reveals cis-regulatory drivers of disease-associated and cell type-specific splicing regulation SE Koplik, AM Yu, MR Shelby, GC Fonseca, CM Roco, Y Zhang, ... bioRxiv, 2025.10. 12.681955, 2025 | | 2025 |
