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Serdal Kirmizialtin
Serdal Kirmizialtin
Associate Professor
Verified email at nyu.edu - Homepage
Title
Cited by
Cited by
Year
How conformational dynamics of DNA polymerase select correct substrates: experiments and simulations
S Kirmizialtin, V Nguyen, KA Johnson, R Elber
Structure 20 (4), 618-627, 2012
1412012
Taming the topology of calix [4] arene-based 2D-covalent organic frameworks: interpenetrated vs noninterpenetrated frameworks and their selective removal of cationic dyes
B Garai, D Shetty, T Skorjanc, F Gándara, N Naleem, S Varghese, ...
Journal of the American Chemical Society 143 (9), 3407-3415, 2021
1262021
Single-molecule electrophoresis of beta-hairpin peptides by electrical recordings and Langevin dynamics simulations.
CP Goodrich, S Kirmizialtin, BM Huyghues-Despointes, AP Zhu
J Phys Chem B 111 (13), 3332-3335, 2007
1082007
RNA and its ionic cloud: solution scattering experiments and atomically detailed simulations
S Kirmizialtin, SA Pabit, SP Meisburger, L Pollack, R Elber
Biophysical journal 102 (4), 819-828, 2012
1052012
The catalytic inactivation of the N-half of human hexokinase 2 and structural and biochemical characterization of its mitochondrial conformation
MH Nawaz, JC Ferreira, L Nedyalkova, H Zhu, C Carrasco-López, ...
Bioscience reports 38 (1), BSR20171666, 2018
952018
Revisiting and computing reaction coordinates with directional milestoning
S Kirmizialtin, R Elber
The journal of physical chemistry A 115 (23), 6137-6148, 2011
942011
Computer simulations of the translocation and unfolding of a protein pulled mechanically through a pore
L Huang, S Kirmizialtin, DE Makarov
The Journal of chemical physics 123 (12), 2005
892005
Topography of the free-energy landscape probed via mechanical unfolding of proteins
S Kirmizialtin, L Huang, DE Makarov
The Journal of chemical physics 122 (23), 2005
872005
The ionic atmosphere around A-RNA: Poisson-Boltzmann and molecular dynamics simulations
S Kirmizialtin, ARJ Silalahi, R Elber, MO Fenley
Biophysical journal 102 (4), 829-838, 2012
862012
Rapid and efficient removal of perfluorooctanoic acid from water with fluorine-rich calixarene-based porous polymers
D Shetty, I Jahovic, T Skorjanc, TS Erkal, L Ali, J Raya, Z Asfari, MA Olson, ...
ACS applied materials & interfaces 12 (38), 43160-43166, 2020
812020
Cationic covalent organic framework for the fluorescent sensing and cooperative adsorption of perfluorooctanoic acid
A Jrad, G Das, N Alkhatib, T Prakasam, F Benyettou, S Varghese, ...
Nature communications 15 (1), 10490, 2024
802024
The in vitro selection world
K Jijakli, B Khraiwesh, W Fu, L Luo, A Alzahmi, J Koussa, ...
Methods 106, 3-13, 2016
752016
Computational exploration of mobile ion distributions around RNA duplex
S Kirmizialtin, R Elber
The Journal of Physical Chemistry B 114 (24), 8207-8220, 2010
752010
Designed cell-penetrating peptide inhibitors of amyloid-beta aggregation and cytotoxicity
A Henning-Knechtel, S Kumar, C Wallin, S Król, SKTS Wärmländer, ...
Cell Reports Physical Science 1 (2), 2020
732020
Light-driven self-assembly of spiropyran-functionalized covalent organic framework
G Das, T Prakasam, N Alkhatib, RG AbdulHalim, F Chandra, SK Sharma, ...
Nature communications 14 (1), 3765, 2023
702023
Translocation of a β-hairpin-forming peptide through a cylindrical tunnel
S Kirmizialtin, V Ganesan, DE Makarov
The Journal of chemical physics 121 (20), 10268-10277, 2004
632004
Revealing the distinct folding phases of an RNA three-helix junction
A Plumridge, AM Katz, GD Calvey, R Elber, S Kirmizialtin, L Pollack
Nucleic Acids Research 46 (14), 7354-7365, 2018
59*2018
Polyelectrolyte properties of single stranded DNA measured using SAXS and single‐molecule FRET: Beyond the wormlike chain model
SP Meisburger, JL Sutton, H Chen, SA Pabit, S Kirmizialtin, R Elber, ...
Biopolymers 99 (12), 1032-1045, 2013
592013
Redox‐responsive covalent organic nanosheets from viologens and calix [4] arene for iodine and toxic dye capture
T Skorjanc, D Shetty, SK Sharma, J Raya, H Traboulsi, DS Han, J Lalla, ...
Chemistry–A European Journal 24 (34), 8648-8655, 2018
572018
Calix [4] arene-based porous organic nanosheets
D Shetty, T Skorjanc, J Raya, SK Sharma, I Jahovic, K Polychronopoulou, ...
ACS applied materials & interfaces 10 (20), 17359-17365, 2018
562018
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Articles 1–20