| Comparative genomics of ethanolamine utilization O Tsoy, D Ravcheev, A Mushegian Journal of bacteriology 191 (23), 7157-7164, 2009 | 129 | 2009 |
| Nitrogen Fixation and Molecular Oxygen: Comparative Genomic Reconstruction of Transcription Regulation in Alphaproteobacteria OV Tsoy, DA Ravcheev, J Čuklina, MS Gelfand Frontiers in microbiology 7, 1343, 2016 | 108 | 2016 |
| Comparative genomics and evolution of regulons of the LacI-family transcription factors DA Ravcheev, MS Khoroshkin, ON Laikova, OV Tsoy, NV Sernova, ... Frontiers in microbiology 5, 294, 2014 | 107 | 2014 |
| Metagenomic analysis of hadopelagic microbial assemblages thriving at the deepest part of Mediterranean Sea, Matapan‐Vavilov Deep F Smedile, E Messina, V La Cono, O Tsoy, LS Monticelli, M Borghini, ... Environmental microbiology 15 (1), 167-182, 2013 | 74 | 2013 |
| DIGGER: exploring the functional role of alternative splicing in protein interactions Z Louadi, K Yuan, A Gress, O Tsoy, OV Kalinina, J Baumbach, ... Nucleic acids research 49 (D1), D309-D318, 2021 | 62 | 2021 |
| Functional enrichment of alternative splicing events with NEASE reveals insights into tissue identity and diseases Z Louadi, ML Elkjaer, M Klug, CT Lio, A Fenn, Z Illes, D Bongiovanni, ... Genome Biology 22 (1), 327, 2021 | 32 | 2021 |
| Network medicine-based epistasis detection in complex diseases: ready for quantum computing M Hoffmann, JM Poschenrieder, M Incudini, S Baier, A Fritz, A Maier, ... Nucleic Acids Research 52 (17), 10144-10160, 2024 | 20 | 2024 |
| A YAP/TAZ–ARHGAP29–RhoA signaling axis regulates podocyte protrusions and integrin adhesions M Rogg, JI Maier, M Helmstädter, A Sammarco, F Kliewe, O Kretz, ... cells 12 (13), 1795, 2023 | 19 | 2023 |
| Alternative splicing analysis benchmark with DICAST A Fenn, O Tsoy, T Faro, FLM Rößler, A Dietrich, J Kersting, Z Louadi, ... NAR genomics and bioinformatics 5 (2), lqad044, 2023 | 19 | 2023 |
| Florigen and its homologs of FT/CETS/PEBP/RKIP/YbhB family may be the enzymes of small molecule metabolism: review of the evidence O Tsoy, A Mushegian BMC Plant Biology 22 (1), 56, 2022 | 14 | 2022 |
| ASimulatoR: splice-aware RNA-Seq data simulation Q Manz, O Tsoy, A Fenn, J Baumbach, U Völker, M List, T Kacprowski Bioinformatics 37 (18), 3008-3010, 2021 | 14 | 2021 |
| Evolution of transcriptional regulation in closely related bacteria OV Tsoy, MA Pyatnitskiy, MD Kazanov, MS Gelfand BMC evolutionary biology 12 (1), 200, 2012 | 13 | 2012 |
| Small Open Reading Frames, Non-Coding RNAs and Repetitive Elements in Bradyrhizobium japonicum USDA 110 J Hahn, OV Tsoy, S Thalmann, J Čuklina, MS Gelfand, ... PLoS One 11 (10), e0165429, 2016 | 10 | 2016 |
| Alternative splicing impacts microRNA regulation within coding regions LM Hackl, A Fenn, Z Louadi, J Baumbach, T Kacprowski, M List, O Tsoy NAR Genomics and Bioinformatics 5 (3), lqad081, 2023 | 9 | 2023 |
| Systematic analysis of alternative splicing in time course data using Spycone CT Lio, G Grabert, Z Louadi, A Fenn, J Baumbach, T Kacprowski, M List, ... Bioinformatics 39 (1), btac846, 2023 | 9 | 2023 |
| Reticulated platelets in coronary artery disease: a multidimensional approach unveils prothrombotic signalling and novel therapeutic targets K Kirmes, J Han, M Klug, CJ Bloxham, O Babyak, J Bernett, L Arend, ... European Heart Journal 46 (45), 4901-4917, 2025 | 7 | 2025 |
| Systematic evaluation of normalization approaches in tandem mass tag and label-free protein quantification data using PRONE L Arend, K Adamowicz, JR Schmidt, Y Burankova, O Zolotareva, O Tsoy, ... Briefings in bioinformatics 26 (3), bbaf201, 2025 | 6 | 2025 |
| Proteomic meta-study harmonization, mechanotyping and drug repurposing candidate prediction with ProHarMeD K Adamowicz, L Arend, A Maier, JR Schmidt, B Kuster, O Tsoy, ... npj Systems Biology and Applications 9 (1), 49, 2023 | 6 | 2023 |
| Minimal genome encoding proteins with constrained amino acid repertoire O Tsoy, M Yurieva, A Kucharavy, M O'Reilly, A Mushegian Nucleic acids research 41 (18), 8444-8451, 2013 | 6 | 2013 |
| Exploring common mechanisms of adverse drug reactions and disease phenotypes through network-based analysis F Firoozbakht, ML Elkjaer, DE Handy, RS Wang, Z Chervontseva, ... Cell Reports Methods 5 (2), 2025 | 5 | 2025 |
