| The SR protein family PJ Shepard, KJ Hertel Genome biology 10 (10), 242, 2009 | 580 | 2009 |
| Complex and dynamic landscape of RNA polyadenylation revealed by PAS-Seq PJ Shepard, EA Choi, J Lu, LA Flanagan, KJ Hertel, Y Shi Rna 17 (4), 761-772, 2011 | 516 | 2011 |
| Transcriptome Sequencing Reveals Potential Mechanism of Cryptic 3’ Splice Site Selection in SF3B1-mutated Cancers C DeBoever, EM Ghia, PJ Shepard, L Rassenti, CL Barrett, K Jepsen, ... PLoS computational biology 11 (3), e1004105, 2015 | 258 | 2015 |
| A trichostatin A expression signature identified by TempO-Seq targeted whole transcriptome profiling JM Yeakley, PJ Shepard, DE Goyena, HC VanSteenhouse, JD McComb, ... PloS one 12 (5), e0178302, 2017 | 234 | 2017 |
| Conserved RNA secondary structures promote alternative splicing PJ Shepard, KJ Hertel Rna 14 (8), 1463-1469, 2008 | 203 | 2008 |
| A chemical–biological similarity-based grouping of complex substances as a prototype approach for evaluating chemical alternatives FA Grimm, Y Iwata, O Sirenko, GA Chappell, FA Wright, DM Reif, ... Green chemistry 18 (16), 4407-4419, 2016 | 94 | 2016 |
| Profiling expression at transcriptome scale PJ Shepard, JM Yeakley, B Seligmann US Patent 9,938,566, 2018 | 85 | 2018 |
| Use of a chemically modified antisense oligonucleotide library to identify and validate Eg5 (kinesin-like 1) as a target for antineoplastic drug development E Koller, S Propp, H Zhang, C Zhao, X Xiao, MY Chang, SA Hirsch, ... Cancer research 66 (4), 2059-2066, 2006 | 62 | 2006 |
| Comparison of base-line and chemical-induced transcriptomic responses in HepaRG and RPTEC/TERT1 cells using TempO-Seq A Limonciel, G Ates, G Carta, A Wilmes, M Watzele, PJ Shepard, ... Archives of toxicology 92 (8), 2517-2531, 2018 | 61 | 2018 |
| Competing upstream 5′ splice sites enhance the rate of proximal splicing MJ Hicks, WF Mueller, PJ Shepard, KJ Hertel Molecular and cellular biology 30 (8), 1878-1886, 2010 | 58 | 2010 |
| Efficient internal exon recognition depends on near equal contributions from the 3′ and 5′ splice sites PJ Shepard, EA Choi, A Busch, KJ Hertel Nucleic acids research 39 (20), 8928-8937, 2011 | 50 | 2011 |
| Aberrant DNA methylation in human iPSCs associates with MYC-binding motifs in a clone-specific manner independent of genetics AD Panopoulos, EN Smith, AD Arias, PJ Shepard, Y Hishida, V Modesto, ... Cell Stem Cell 20 (4), 505-517. e6, 2017 | 48 | 2017 |
| Extraction-free whole transcriptome gene expression analysis of FFPE sections and histology-directed subareas of tissue CL Trejo, M Babić, E Imler, M Gonzalez, SI Bibikov, PJ Shepard, ... PLoS One 14 (2), e0212031, 2019 | 42 | 2019 |
| Genetic and epigenetic profiling of CLL disease progression reveals limited somatic evolution and suggests a relationship to memory-cell development EN Smith, EM Ghia, CM DeBoever, LZ Rassenti, K Jepsen, KA Yoon, ... Blood cancer journal 5 (4), e303-e303, 2015 | 42 | 2015 |
| Jagged 2 inhibitors for inducing apoptosis E Koller, P Shepard US Patent App. 10/096,399, 2003 | 28 | 2003 |
| Consanguinity and rare mutations outside of MCCC genes underlie nonspecific phenotypes of MCCD PJ Shepard, BA Barshop, MR Baumgartner, JB Hansen, K Jepsen, ... Genetics in Medicine 17 (8), 660-667, 2015 | 19 | 2015 |
| Genetic ancestry of participants in the National Children’s Study EN Smith, K Jepsen, AD Arias, PJ Shepard, CD Chambers, KA Frazer Genome biology 15 (2), R22, 2014 | 17 | 2014 |
| Development of a zebrafish S1500+ sentinel gene set for high-throughput transcriptomics MR Balik-Meisner, D Mav, DP Phadke, LJ Everett, RR Shah, T Tal, ... Zebrafish 16 (4), 331-347, 2019 | 14 | 2019 |
| Embracing the complexity of pre-mRNA splicing PJ Shepard, KJ Hertel Cell research 20 (8), 866-868, 2010 | 8 | 2010 |
| Method of nucleic acid sequence detection M Babic, CL Trejo, PJ Shepard, JM Yeakley, B Seligmann US Patent 11,434,538, 2022 | 4 | 2022 |
Kelly A. FrazerUniversity of California, San DiegoVerified email at health.ucsd.edu
