| An integrated encyclopedia of DNA elements in the human genome ENCODE Project Consortium Nature 489 (7414), 57, 2012 | 18916 | 2012 |
| Initial sequencing and comparative analysis of the mouse genome European Bioinformatics Institute: Birney Ewan 3 Goldman Nick 3 Kasprzyk ... Nature 420 (6915), 520-562, 2002 | 8959 | 2002 |
| GENCODE: the reference human genome annotation for The ENCODE Project J Harrow, A Frankish, JM Gonzalez, E Tapanari, M Diekhans, ... Genome research 22 (9), 1760-1774, 2012 | 5698 | 2012 |
| The complete sequence of a human genome S Nurk, S Koren, A Rhie, M Rautiainen, AV Bzikadze, A Mikheenko, ... Science 376 (6588), 44-53, 2022 | 3544 | 2022 |
| GENCODE reference annotation for the human and mouse genomes A Frankish, M Diekhans, AM Ferreira, R Johnson, I Jungreis, J Loveland, ... Nucleic acids research 47 (D1), D766-D773, 2019 | 3377 | 2019 |
| Towards complete and error-free genome assemblies of all vertebrate species A Rhie, SA McCarthy, O Fedrigo, J Damas, G Formenti, S Koren, ... Nature 592 (7856), 737-746, 2021 | 2942 | 2021 |
| Using native and syntenically mapped cDNA alignments to improve de novo gene finding M Stanke, M Diekhans, R Baertsch, D Haussler Bioinformatics 24 (5), 637-644, 2008 | 2501 | 2008 |
| The UCSC genome browser database D Karolchik, R Baertsch, M Diekhans, TS Furey, A Hinrichs, YT Lu, ... Nucleic acids research 31 (1), 51-54, 2003 | 1946 | 2003 |
| The UCSC genome browser database: update 2006 AS Hinrichs, D Karolchik, R Baertsch, GP Barber, G Bejerano, H Clawson, ... Nucleic acids research 34 (suppl_1), D590-D598, 2006 | 1857 | 2006 |
| A user's guide to the encyclopedia of DNA elements (ENCODE) ENCODE Project Consortium PLoS biology 9 (4), e1001046, 2011 | 1551 | 2011 |
| GENCODE 2021 A Frankish, M Diekhans, I Jungreis, J Lagarde, JE Loveland, JM Mudge, ... Nucleic acids research 49 (D1), D916-D923, 2021 | 1367 | 2021 |
| The UCSC genome browser database: update 2011 PA Fujita, B Rhead, AS Zweig, AS Hinrichs, D Karolchik, MS Cline, ... Nucleic acids research 39 (suppl_1), D876-D882, 2010 | 1312 | 2010 |
| The UCSC genome browser database: 2015 update KR Rosenbloom, J Armstrong, GP Barber, J Casper, H Clawson, ... Nucleic acids research 43 (D1), D670-D681, 2015 | 1123 | 2015 |
| A draft human pangenome reference WW Liao, M Asri, J Ebler, D Doerr, M Haukness, G Hickey, S Lu, JK Lucas, ... Nature 617 (7960), 312-324, 2023 | 1084 | 2023 |
| ENCODE data in the UCSC Genome Browser: year 5 update KR Rosenbloom, CA Sloan, VS Malladi, TR Dreszer, K Learned, ... Nucleic acids research 41 (D1), D56-D63, 2012 | 938 | 2012 |
| The UCSC Genome Browser database: extensions and updates 2013 LR Meyer, AS Zweig, AS Hinrichs, D Karolchik, RM Kuhn, M Wong, ... Nucleic acids research 41 (D1), D64-D69, 2012 | 927 | 2012 |
| The UCSC genome browser database: 2019 update M Haeussler, AS Zweig, C Tyner, ML Speir, KR Rosenbloom, BJ Raney, ... Nucleic acids research 47 (D1), D853-D858, 2019 | 860 | 2019 |
| The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). DS Gerhard, L Wagner, EA Feingold, CM Shenmen, LH Grouse, ... Genome research 14 (10B), 2121-2127, 2004 | 858 | 2004 |
| Multiple evidence strands suggest that there may be as few as 19 000 human protein-coding genes I Ezkurdia, D Juan, JM Rodriguez, A Frankish, M Diekhans, J Harrow, ... Human molecular genetics 23 (22), 5866-5878, 2014 | 833 | 2014 |
| The UCSC genome browser database: 2014 update D Karolchik, GP Barber, J Casper, H Clawson, MS Cline, M Diekhans, ... Nucleic acids research 42 (D1), D764-D770, 2014 | 792 | 2014 |
