| A comparison of automatic cell identification methods for single-cell RNA sequencing data T Abdelaal, L Michielsen, D Cats, D Hoogduin, H Mei, MJT Reinders, ... Genome biology 20 (1), 194, 2019 | 635 | 2019 |
| BrainScope: interactive visual exploration of the spatial and temporal human brain transcriptome SMH Huisman, B Van Lew, A Mahfouz, N Pezzotti, T Höllt, L Michielsen, ... Nucleic acids research 45 (10), e83-e83, 2017 | 48 | 2017 |
| Hierarchical progressive learning of cell identities in single-cell data L Michielsen, MJT Reinders, A Mahfouz Nature Communications 12 (1), 2799, 2021 | 46 | 2021 |
| Single-cell reference mapping to construct and extend cell-type hierarchies L Michielsen, M Lotfollahi, D Strobl, L Sikkema, MJT Reinders, FJ Theis, ... NAR Genomics and Bioinformatics 5 (3), lqad070, 2023 | 32 | 2023 |
| Cell type matching across species using protein embeddings and transfer learning K Biharie, L Michielsen, MJT Reinders, A Mahfouz Bioinformatics 39 (Supplement_1), i404-i412, 2023 | 7 | 2023 |
| A spatial long-read approach at near-single-cell resolution reveals developmental regulation of splicing and polyadenylation sites in distinct cortical layers and cell types C Foord, AD Prjibelski, W Hu, L Michielsen, A Vandelli, O Narykov, ... Nature Communications 16 (1), 8093, 2025 | 3 | 2025 |
| Predicting cell population-specific gene expression from genomic sequence L Michielsen, MJT Reinders, A Mahfouz Frontiers in Bioinformatics 4, 1347276, 2024 | 3 | 2024 |
| Predicting cell-type-specific exon inclusion in the human brain reveals more complex splicing mechanisms in neurons than glia L Michielsen, J Hsu, A Joglekar, N Belchikov, M Reinders, H Tilgner, ... bioRxiv, 2024.03. 18.585465, 2024 | 3 | 2024 |
| A unified rodent atlas reveals the cellular complexity and evolutionary divergence of the dorsal vagal complex C Hes, AJ Tomlinson, L Michielsen, HJ Murdoch, F Soltani, MV Kokoeva, ... eLife 14, RP106217, 2025 | 2 | 2025 |
| Spatial isoform sequencing at sub-micrometer single-cell resolution reveals novel patterns of spatial isoform variability in brain cell types L Michielsen, AD Prjibelski, C Foord, W Hu, J Jarroux, J Hsu, AI Tomescu, ... bioRxiv, 2025.06. 25.661563, 2025 | | 2025 |
| Automatic cell identification in single-cell RNA-sequencing data L Michielsen | | 2020 |
Ahmed MahfouzAssociate Professor, Leiden University Medical CenterVerified email at lumc.nl
