| Genome-wide identification of microRNAs regulating cholesterol and triglyceride homeostasis A Wagschal, SH Najafi-Shoushtari, L Wang, L Goedeke, S Sinha, ... Nature medicine 21 (11), 1290-1297, 2015 | 317 | 2015 |
| Broad immune activation underlies shared set point signatures for vaccine responsiveness in healthy individuals and disease activity in patients with lupus Y Kotliarov, R Sparks, AJ Martins, MP Mulè, Y Lu, M Goswami, L Kardava, ... Nature medicine 26 (4), 618-629, 2020 | 213 | 2020 |
| Genome-wide transcriptional analysis of the human cell cycle identifies genes differentially regulated in normal and cancer cells Z Bar-Joseph, Z Siegfried, M Brandeis, B Brors, Y Lu, R Eils, BD Dynlacht, ... Proceedings of the National Academy of Sciences 105 (3), 955-960, 2008 | 198 | 2008 |
| Cross species analysis of microarray expression data Y Lu, P Huggins, Z Bar-Joseph Bioinformatics 25 (12), 1476-1483, 2009 | 130 | 2009 |
| Epstein–Barr virus nuclear antigen leader protein localizes to promoters and enhancers with cell transcription factors and EBNA2 D Portal, H Zhou, B Zhao, PV Kharchenko, E Lowry, L Wong, ... Proceedings of the National Academy of Sciences 110 (46), 18537-18542, 2013 | 98 | 2013 |
| A probabilistic generative model for GO enrichment analysis Y Lu, R Rosenfeld, I Simon, GJ Nau, Z Bar-Joseph Nucleic acids research 36 (17), e109-e109, 2008 | 95 | 2008 |
| Learning Temporal Causal Graphs for Relational Time-Series Analysis Y Liu, A Niculescu-Mizil, A Lozano International Conference on Machine Learning, 2010 | 77 | 2010 |
| The tandem inversion duplication in Salmonella enterica: selection drives unstable precursors to final mutation types E Kugelberg, E Kofoid, DI Andersson, Y Lu, J Mellor, FP Roth, JR Roth Genetics 185 (1), 65, 2010 | 65 | 2010 |
| Systematic analysis of cell-to-cell expression variation of T lymphocytes in a human cohort identifies aging and genetic associations Y Lu, A Biancotto, F Cheung, E Remmers, N Shah, JP McCoy, JS Tsang Immunity 45 (5), 1162-1175, 2016 | 64 | 2016 |
| Genome-wide analysis of Epstein-Barr virus Rta DNA binding AMF Heilmann, MA Calderwood, D Portal, Y Lu, E Johannsen Journal of virology 86 (9), 5151-5164, 2012 | 59 | 2012 |
| Budding Yeast SSD1-V Regulates Transcript Levels of Many Longevity Genes and Extends Chronological Life Span in Purified Quiescent Cells L Li, Y Lu, LX Qin, Z Bar-Joseph, M Werner-Washburne, LL Breeden Molecular biology of the cell 20 (17), 3851-3864, 2009 | 58 | 2009 |
| Combined analysis reveals a core set of cycling genes Y Lu, S Mahony, PV Benos, R Rosenfeld, I Simon, LL Breeden, ... Genome biology 8 (7), R146, 2007 | 44 | 2007 |
| A crowdsourcing approach for reusing and meta-analyzing gene expression data N Shah, Y Guo, KV Wendelsdorf, Y Lu, R Sparks, JS Tsang Nature Biotechnology 34 (8), 803-806, 2016 | 41 | 2016 |
| Genome Rearrangements Caused by Depletion of Essential DNA Replication Proteins in Saccharomyces cerevisiae E Cheng, JA Vaisica, J Ou, A Baryshnikova, Y Lu, FP Roth, GW Brown Genetics 192 (1), 147-160, 2012 | 39 | 2012 |
| Environment tunes propagation of cell-to-cell variation in the human macrophage gene network AJ Martins, M Narayanan, T Prüstel, B Fixsen, K Park, RA Gottschalk, Y Lu, ... Cell systems 4 (4), 379-392. e12, 2017 | 24 | 2017 |
| Cross species expression analysis of innate immune response Y Lu, R Rosenfeld, GJ Nau, Z Bar-Joseph Annual International Conference on Research in Computational Molecular …, 2009 | 24 | 2009 |
| Identifying cycling genes by combining sequence homology and expression data Y Lu, R Rosenfeld, Z Bar-Joseph Bioinformatics 22 (14), e314-e322, 2006 | 24 | 2006 |
| Prevalence and pathogenicity of autoantibodies in patients with idiopathic CD4 lymphopenia A Perez-Diez, CS Wong, X Liu, H Mystakelis, J Song, Y Lu, V Sheikh, ... The Journal of Clinical Investigation 130 (10), 5326-5337, 2020 | 23 | 2020 |
| Temporal graphical models for cross-species gene regulatory network discovery Y Liu, A Niculescu-Mizil, A Lozano, Y Lu Journal of bioinformatics and computational biology 9 (02), 231-250, 2011 | 16 | 2011 |
| Computational methods for analyzing dynamic regulatory networks A Gitter, Y Lu, Z Bar-Joseph Computational Biology of Transcription Factor Binding, 419-441, 2010 | 14 | 2010 |
Ziv Bar-JosephProfessor of Computational Biology and Machine Learning, School of Computer Science, Carnegie Mellon UniversityVerified email at andrew.cmu.edu
