| Transcriptome-wide analyses of CstF64–RNA interactions in global regulation of mRNA alternative polyadenylation C Yao, J Biesinger, J Wan, L Weng, Y Xing, X Xie, Y Shi Proceedings of the National Academy of Sciences 109 (46), 18773-18778, 2012 | 236 | 2012 |
| Biallelic genome modification in F0 Xenopus tropicalis embryos using the CRISPR/Cas system IL Blitz, J Biesinger, X Xie, KWY Cho genesis 51 (12), 827-834, 2013 | 222 | 2013 |
| Genome-wide localization of SREBP-2 in hepatic chromatin predicts a role in autophagy YK Seo, TI Jeon, HK Chong, J Biesinger, X Xie, TF Osborne Cell metabolism 13 (4), 367-375, 2011 | 194 | 2011 |
| A Risk Variant in an miR-125b Binding Site in BMPR1B Is Associated with Breast Cancer Pathogenesis P Sætrom, J Biesinger, SM Li, D Smith, LF Thomas, K Majzoub, GE Rivas, ... Cancer research 69 (18), 7459-7465, 2009 | 172 | 2009 |
| Genome-wide view of TGFβ/Foxh1 regulation of the early mesendoderm program WT Chiu, R Charney Le, IL Blitz, MB Fish, Y Li, J Biesinger, X Xie, ... Development 141 (23), 4537-4547, 2014 | 93 | 2014 |
| Genome-wide analysis of hepatic LRH-1 reveals a promoter binding preference and suggests a role in regulating genes of lipid metabolism in concert with FXR HK Chong, J Biesinger, YK Seo, X Xie, TF Osborne BMC genomics 13 (1), 51, 2012 | 66 | 2012 |
| Discovering and mapping chromatin states using a tree hidden Markov model J Biesinger, Y Wang, X Xie BMC bioinformatics 14 (Suppl 5), S4, 2013 | 64 | 2013 |
| The effect of Nipped-B-like (Nipbl) haploinsufficiency on genome-wide cohesin binding and target gene expression: modeling Cornelia de Lange syndrome DA Newkirk, YY Chen, R Chien, W Zeng, J Biesinger, E Flowers, ... Clinical epigenetics 9 (1), 89, 2017 | 60 | 2017 |
| Integrative ChIP-seq/microarray analysis identifies a CTNNB1 target signature enriched in intestinal stem cells and colon cancer K Watanabe, J Biesinger, ML Salmans, BS Roberts, WT Arthur, M Cleary, ... PloS one 9 (3), e92317, 2014 | 59 | 2014 |
| AREM: aligning short reads from ChIP-sequencing by expectation maximization D Newkirk, J Biesinger, A Chon, K Yokomori, X Xie Journal of Computational Biology 18 (11), 1495-1505, 2011 | 46 | 2011 |
| Integrative ChIP-seq K Watanabe, J Biesinger, ML Salmans, BS Roberts, WT Arthur Microarray Analysis Identifies a CTNNB1 Target Signature, 2014 | | 2014 |
| Combined biological and computational approaches to understand the role of Get1/Grhl3 in epidermal differentiation RP Herndon, A Bhandari, D Dizon, R Chadwick, J Biesinger, X Xie, ... JOURNAL OF INVESTIGATIVE DERMATOLOGY 131, S61-S61, 2011 | | 2011 |
| Genome‐wide Localization of SREBP‐2 in Mouse Liver‐Chromatin by ChIP‐seq Y Seo, HK Chong, J Biesinger, X Xie, TI Jeon, TF Osborne The FASEB Journal 24, lb112-lb112, 2010 | | 2010 |
| The effect of Nipped-B-like (Nipbl) haploinsufficiency on genome-wide cohesin binding and DA Newkirk, YY Chen, R Chien, W Zeng, J Biesinger, E Flowers, ... | | |
| Additional file 1: supplemental material for discovering and mapping chromatin states using a tree hidden Markov model J Biesinger, Y Wang, X Xie | | |
| Solving Generalized FLSA with ADMM Algorithm for Copy Number Variation Detection in Human Genomes J Biesinger, Y Chen | | |
Xiaohui XieProfessor of Computer Science, University of California, IrvineVerified email at uci.edu
