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Nagiza Samatova
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Theory-guided data science: A new paradigm for scientific discovery from data
A Karpatne, G Atluri, JH Faghmous, M Steinbach, A Banerjee, A Ganguly, ...
IEEE Transactions on knowledge and data engineering 29 (10), 2318-2331, 2017
17802017
Anomaly detection in dynamic networks: a survey
S Ranshous, S Shen, D Koutra, S Harenberg, C Faloutsos, NF Samatova
Wiley Interdisciplinary Reviews: Computational Statistics 7 (3), 223-247, 2015
5212015
Detecting differential and correlated protein expression in label-free shotgun proteomics
B Zhang, NC VerBerkmoes, MA Langston, E Uberbacher, RL Hettich, ...
Journal of proteome research 5 (11), 2909-2918, 2006
4932006
Gene network shaping of inherent noise spectra
DW Austin, MS Allen, JM McCollum, RD Dar, JR Wilgus, GS Sayler, ...
Nature 439 (7076), 608-611, 2006
3982006
Community detection in large‐scale networks: a survey and empirical evaluation
S Harenberg, G Bello, L Gjeltema, S Ranshous, J Harlalka, R Seay, ...
Wiley Interdisciplinary Reviews: Computational Statistics 6 (6), 426-439, 2014
3082014
Hello ADIOS: the challenges and lessons of developing leadership class I/O frameworks
Q Liu, J Logan, Y Tian, H Abbasi, N Podhorszki, JY Choi, S Klasky, ...
Concurrency and Computation: Practice and Experience 26 (7), 1453-1473, 2014
2962014
Impact of pretreated switchgrass and biomass carbohydrates on Clostridium thermocellum ATCC 27405 cellulosome composition: a quantitative proteomic analysis
B Raman, C Pan, GB Hurst, M Rodriguez Jr, CK McKeown, PK Lankford, ...
PloS one 4 (4), e5271, 2009
2962009
The sorting direct method for stochastic simulation of biochemical systems with varying reaction execution behavior
JM McCollum, GD Peterson, CD Cox, ML Simpson, NF Samatova
Computational biology and chemistry 30 (1), 39-49, 2006
2712006
Compressing the incompressible with ISABELA: In-situ reduction of spatio-temporal data
S Lakshminarasimhan, N Shah, S Ethier, S Klasky, R Latham, R Ross, ...
European Conference on Parallel Processing, 366-379, 2011
2572011
A scalable, parallel algorithm for maximal clique enumeration
MC Schmidt, NF Samatova, K Thomas, BH Park
Journal of parallel and distributed computing 69 (4), 417-428, 2009
2102009
From pull-down data to protein interaction networks and complexes with biological relevance
B Zhang, BH Park, T Karpinets, NF Samatova
Bioinformatics 24 (7), 979-986, 2008
1872008
Sex differences in cognitive decline in subjects with high likelihood of mild cognitive impairment due to Alzheimer’s disease
D Sohn, K Shpanskaya, JE Lucas, JR Petrella, AJ Saykin, RE Tanzi, ...
Scientific reports 8 (1), 7490, 2018
1662018
Learning entity type embeddings for knowledge graph completion
C Moon, P Jones, NF Samatova
Proceedings of the 2017 ACM on conference on information and knowledge …, 2017
1552017
Community-based anomaly detection in evolutionary networks
Z Chen, W Hendrix, NF Samatova
Journal of Intelligent Information Systems 39 (1), 59-85, 2012
1532012
Compressed ion temperature gradient turbulence in diverted tokamak edge
CS Chang, S Ku, PH Diamond, Z Lin, S Parker, TS Hahm, N Samatova
Physics of Plasmas 16 (5), 2009
1412009
ISABELA for effective in situ compression of scientific data
S Lakshminarasimhan, N Shah, S Ethier, SH Ku, CS Chang, S Klasky, ...
Concurrency and Computation: Practice and Experience 25 (4), 524-540, 2013
1322013
Exchange pattern mining in the bitcoin transaction directed hypergraph
S Ranshous, CA Joslyn, S Kreyling, K Nowak, NF Samatova, CL West, ...
International conference on financial cryptography and data security, 248-263, 2017
1312017
Genome-scale computational approaches to memory-intensive applications in systems biology
Y Zhang, FN Abu-Khzam, NE Baldwin, EJ Chesler, MA Langston, ...
SC'05: Proceedings of the 2005 ACM/IEEE Conference on Supercomputing, 12-12, 2005
1272005
Efficient data access for parallel BLAST
H Lin, X Ma, P Chandramohan, A Geist, N Samatova
19th IEEE International Parallel and Distributed Processing Symposium, 10 pp., 2005
1212005
Improved genome annotation for Zymomonas mobilis
S Yang, KM Pappas, LJ Hauser, ML Land, GL Chen, GB Hurst, C Pan, ...
Nature biotechnology 27 (10), 893-894, 2009
1192009
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