| A communal catalogue reveals Earth’s multiscale microbial diversity LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ... Nature 551 (7681), 457-463, 2017 | 2936 | 2017 |
| ASTRAL-III: polynomial time species tree reconstruction from partially resolved gene trees C Zhang, M Rabiee, E Sayyari, S Mirarab BMC bioinformatics 19 (Suppl 6), 153, 2018 | 2501 | 2018 |
| Whole-genome analyses resolve early branches in the tree of life of modern birds ED Jarvis, S Mirarab, AJ Aberer, B Li, P Houde, C Li, SYW Ho, ... Science 346 (6215), 1320-1331, 2014 | 2159 | 2014 |
| One thousand plant transcriptomes and the phylogenomics of green plants Nature 574 (7780), 679-685, 2019 | 1698 | 2019 |
| ASTRAL: genome-scale coalescent-based species tree estimation S Mirarab, R Reaz, MS Bayzid, T Zimmermann, MS Swenson, T Warnow Bioinformatics 30 (17), i541-i548, 2014 | 1406 | 2014 |
| Phylotranscriptomic analysis of the origin and early diversification of land plants NJ Wickett, S Mirarab, N Nguyen, T Warnow, E Carpenter, N Matasci, ... Proceedings of the National Academy of Sciences 111 (45), E4859-E4868, 2014 | 1380 | 2014 |
| ASTRAL-II: coalescent-based species tree estimation with many hundreds of taxa and thousands of genes S Mirarab, T Warnow Bioinformatics 31 (12), i44-i52, 2015 | 1035 | 2015 |
| American gut: an open platform for citizen science microbiome research D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ... Msystems 3 (3), 10.1128/msystems. 00031-18, 2018 | 890 | 2018 |
| Fast coalescent-based computation of local branch support from quartet frequencies E Sayyari, S Mirarab Molecular biology and evolution 33 (7), 1654-1668, 2016 | 855 | 2016 |
| Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0 F Asnicar, AM Thomas, F Beghini, C Mengoni, S Manara, P Manghi, ... Nature communications 11 (1), 2500, 2020 | 739 | 2020 |
| Data access for the 1,000 Plants (1KP) project N Matasci, LH Hung, Z Yan, EJ Carpenter, NJ Wickett, S Mirarab, ... Gigascience 3 (1), 2047-217X-3-17, 2014 | 619 | 2014 |
| PASTA: ultra-large multiple sequence alignment S Mirarab, N Nguyen, T Warnow International conference on research in computational molecular biology, 177-191, 2014 | 543 | 2014 |
| Greengenes2 unifies microbial data in a single reference tree D McDonald, Y Jiang, M Balaban, K Cantrell, Q Zhu, A Gonzalez, ... Nature biotechnology 42 (5), 715-718, 2024 | 524 | 2024 |
| Dense sampling of bird diversity increases power of comparative genomics S Feng, J Stiller, Y Deng, J Armstrong, QI Fang, AH Reeve, D Xie, G Chen, ... Nature 587 (7833), 252-257, 2020 | 454 | 2020 |
| Phylogenetic placement of exact amplicon sequences improves associations with clinical information S Janssen, D McDonald, A Gonzalez, JA Navas-Molina, L Jiang, ZZ Xu, ... Msystems 3 (3), 10.1128/msystems. 00021-18, 2018 | 454 | 2018 |
| Large-scale ruminant genome sequencing provides insights into their evolution and distinct traits L Chen, Q Qiu, YU Jiang, K Wang, Z Lin, Z Li, F Bibi, Y Yang, J Wang, ... Science 364 (6446), eaav6202, 2019 | 427 | 2019 |
| TreeShrink: fast and accurate detection of outlier long branches in collections of phylogenetic trees U Mai, S Mirarab BMC genomics 19 (Suppl 5), 272, 2018 | 389 | 2018 |
| Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea Q Zhu, U Mai, W Pfeiffer, S Janssen, F Asnicar, JG Sanders, ... Nature communications 10 (1), 5477, 2019 | 383 | 2019 |
| SEPP: SATé-enabled phylogenetic placement S Mirarab, N Nguyen, T Warnow Biocomputing 2012, 247-258, 2012 | 328 | 2012 |
| Evaluating summary methods for multilocus species tree estimation in the presence of incomplete lineage sorting S Mirarab, MS Bayzid, T Warnow Systematic Biology 65 (3), 366-380, 2016 | 321 | 2016 |
Tandy WarnowGrainger Distinguished Chair in Engineering, UIUCVerified email at illinois.edu
