| The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models M Hucka, A Finney, HM Sauro, H Bolouri, JC Doyle, H Kitano, AP Arkin, ... Bioinformatics 19 (4), 524-531, 2003 | 3968 | 2003 |
| Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v. 3.0 L Heirendt, S Arreckx, T Pfau, SN Mendoza, A Richelle, A Heinken, ... Nature protocols 14 (3), 639-702, 2019 | 1392 | 2019 |
| A community-driven global reconstruction of human metabolism I Thiele, N Swainston, RMT Fleming, A Hoppe, S Sahoo, MK Aurich, ... Nature biotechnology 31 (5), 419-425, 2013 | 1292 | 2013 |
| The systems biology graphical notation N Le Novère, M Hucka, H Mi, S Moodie, F Schreiber, A Sorokin, E Demir, ... Nature biotechnology 27 (8), 735-741, 2009 | 1125 | 2009 |
| BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems N Le Novère, B Bornstein, A Broicher, M Courtot, M Donizelli, H Dharuri, ... Nucleic Acids Research 34 (suppl 1), D689-D691, 2006 | 1012 | 2006 |
| The BioPAX community standard for pathway data sharing E Demir, MP Cary, S Paley, K Fukuda, C Lemer, I Vastrik, G Wu, ... Nature biotechnology 28 (9), 935-942, 2010 | 847 | 2010 |
| Minimum information requested in the annotation of biochemical models (MIRIAM) N Le Novère, A Finney, M Hucka, US Bhalla, F Campagne, ... Nature biotechnology 23 (12), 1509-1515, 2005 | 757 | 2005 |
| A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology MJ Herrgård, N Swainston, P Dobson, WB Dunn, KY Arga, M Arvas, ... Nature biotechnology 26 (10), 1155-1160, 2008 | 717 | 2008 |
| BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models C Li, M Donizelli, N Rodriguez, H Dharuri, L Endler, V Chelliah, L Li, E He, ... BMC systems biology 4 (1), 92, 2010 | 713 | 2010 |
| LibSBML: an API library for SBML BJ Bornstein, SM Keating, A Jouraku, M Hucka Bioinformatics 24 (6), 880, 2008 | 520 | 2008 |
| Rules for modeling signal-transduction systems WS Hlavacek, JR Faeder, ML Blinov, RG Posner, M Hucka, W Fontana Sci STKE 344, 2006, 2006 | 471 | 2006 |
| BioModels—15 years of sharing computational models in life science RS Malik-Sheriff, M Glont, TVN Nguyen, K Tiwari, MG Roberts, A Xavier, ... Nucleic acids research 48 (D1), D407-D415, 2020 | 454 | 2020 |
| FAIRsharing as a community approach to standards, repositories and policies Nature Biotechnology 37 (4), 358, 2019 | 404 | 2019 |
| Next generation simulation tools: the Systems Biology Workbench and BioSPICE integration HM Sauro, M Hucka, A Finney, C Wellock, H Bolouri, J Doyle, H Kitano Omics A Journal of Integrative Biology 7 (4), 355-372, 2003 | 355 | 2003 |
| Controlled vocabularies and semantics in systems biology M Courtot, N Juty, C Knüpfer, D Waltemath, A Zhukova, A Dräger, ... Molecular systems biology 7 (1), 2011 | 353 | 2011 |
| Evolving a lingua franca and associated software infrastructure for computational systems biology: the Systems Biology Markup Language (SBML) project M Hucka, A Finney, BJ Bornstein, SM Keating, BE Shapiro, J Matthews, ... Systems Biology 1 (1), 41-53, 2004 | 340 | 2004 |
| BioModels: ten-year anniversary V Chelliah, N Juty, I Ajmera, R Ali, M Dumousseau, M Glont, M Hucka, ... Nucleic acids research 43 (D1), D542-D548, 2015 | 333 | 2015 |
| Reproducible computational biology experiments with SED-ML-the simulation experiment description markup language D Waltemath, R Adams, FT Bergmann, M Hucka, F Kolpakov, AK Miller, ... BMC systems biology 5 (1), 198, 2011 | 318 | 2011 |
| SBML Level 3: an extensible format for the exchange and reuse of biological models SM Keating, D Waltemath, M König, F Zhang, A Dräger, C Chaouiya, ... Molecular systems biology 16 (8), e9110, 2020 | 305 | 2020 |
| Systems biology markup language: Level 2 and beyond A Finney, M Hucka Biochemical Society Transactions 31 (6), 1472-1473, 2003 | 274 | 2003 |
Sarah KeatingUCLVerified email at ucl.ac.uk
