| Integrative single-cell RNA-seq and ATAC-seq analysis of human developmental hematopoiesis AM Ranzoni, A Tangherloni, I Berest, SG Riva, B Myers, PM Strzelecka, ... Cell stem cell 28 (3), 472-487. e7, 2021 | 342 | 2021 |
| Structural and non-coding variants increase the diagnostic yield of clinical whole genome sequencing for rare diseases AT Pagnamenta, C Camps, E Giacopuzzi, JM Taylor, M Hashim, ... Genome medicine 15 (1), 94, 2023 | 61 | 2023 |
| SMaSH: a scalable, general marker gene identification framework for single-cell RNA-sequencing ME Nelson, SG Riva, A Cvejic BMC bioinformatics 23 (1), 328, 2022 | 39* | 2022 |
| MLL-AF4 cooperates with PAF1 and FACT to drive high-density enhancer interactions in leukemia NT Crump, AL Smith, L Godfrey, AM Dopico-Fernandez, N Denny, ... Nature Communications 14 (1), 5208, 2023 | 19 | 2023 |
| GTAC enables parallel genotyping of multiple genomic loci with chromatin accessibility profiling in single cells S Turkalj, NA Jakobsen, A Groom, M Metzner, SG Riva, ER Gür, ... Cell Stem Cell 30 (5), 722-740. e11, 2023 | 17 | 2023 |
| SMGen: A generator of synthetic models of biochemical reaction networks SG Riva, P Cazzaniga, MS Nobile, S Spolaor, L Rundo, D Besozzi, ... Symmetry 14 (1), 119, 2022 | 14 | 2022 |
| Active regulatory elements recruit cohesin to establish cell specific chromatin domains E Georgiades, C Harrold, N Roberts, M Kassouf, SG Riva, E Sanders, ... Scientific Reports 15 (1), 11780, 2025 | 12 | 2025 |
| Integration of multiple scrna-seq datasets on the autoencoder latent space SG Riva, P Cazzaniga, A Tangherloni 2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2021 | 9 | 2021 |
| The impact of representation on the optimization of marker panels for single-cell RNA data A Tangherloni, SG Riva, S Spolaor, D Besozzi, MS Nobile, P Cazzaniga 2021 IEEE Congress on Evolutionary Computation (CEC), 1423-1430, 2021 | 8 | 2021 |
| MAGNETO: Cell type marker panel generator from single-cell transcriptomic data A Tangherloni, SG Riva, B Myers, FM Buffa, P Cazzaniga Journal of Biomedical Informatics 147, 104510, 2023 | 6 | 2023 |
| Catch-up: A high-throughput upstream-pipeline for bulk atac-seq and chip-seq data SG Riva, E Georgiades, ER Gur, M Baxter, JR Hughes JoVE (Journal of Visualized Experiments), e65633, 2023 | 6 | 2023 |
| Predicting and characterizing legal claims of hospitals with computational intelligence: the legal and ethical implications C Gallese, C Fuchs, SG Riva, E Foglia, F Schettini, L Ferrario, E Falletti, ... 2022 IEEE Conference on Computational Intelligence in Bioinformatics and …, 2022 | 6 | 2022 |
| Consensus Clustering Strategy for Cell Type Assignments of scRNA-seq Data SG Riva, B Myers, P Cazzaniga, FM Buffa, A Tangherloni 2023 IEEE Conference on Computational Intelligence in Bioinformatics and …, 2023 | 4 | 2023 |
| Multi-objective optimization for marker panel identification in single-cell data A Tangherloni, SG Riva, B Myers, P Cazzaniga 2022 IEEE Conference on Computational Intelligence in Bioinformatics and …, 2022 | 4 | 2022 |
| Deciphering cis-regulatory elements using REgulamentary SG Riva, E Georgiades, JC Herrmann, ER Gür, E Sanders, M Sergeant, ... bioRxiv, 2024.05. 24.595662, 2024 | 3 | 2024 |
| A Deep Learning Pipeline for the Automatic cell type Assignment of scRNA-seq Data SG Riva, B Myers, P Cazzaniga, A Tangherloni 2022 IEEE Conference on Computational Intelligence in Bioinformatics and …, 2022 | 3 | 2022 |
| SMGen: a generator of synthetic models of biochemical reaction networks. Symmetry. 2022; 14: 119 S Riva, P Cazzaniga, M Nobile, S Spolaor, L Rundo, D Besozzi, ... s Note: MDPI stays neutral with regard to jurisdictional claims in published …, 2022 | 3* | 2022 |
| REnformer, a single-cell ATAC-seq predicting model to investigate open chromatin sites SG Riva, E Sanders, T Wilson, N Stranieri, ER Gür, M Baxter, JR Hughes 2025 IEEE Conference on Computational Intelligence in Bioinformatics and …, 2025 | 1 | 2025 |
| IRX3 Oncogene Activation in T-ALL through Enhancer Hijacking Caused By fto Intron 8 Deletions S Rahman, N Farah, J Demeulemeester, J R Costa, G Bloye, D O'Connor, ... Blood 140 (Supplement 1), 1009-1010, 2022 | 1 | 2022 |
| Zone Equalisation Normalisation For Improved Alignment of Epigenetic Signal T Wilson, TA Milne, SG Riva, JR Hughes bioRxiv, 2025.12. 10.693203, 2025 | | 2025 |
