| GraphBin: refined binning of metagenomic contigs using assembly graphs V Mallawaarachchi, A Wickramarachchi, Y Lin Bioinformatics 36 (11), 3307-3313, 2020 | 98 | 2020 |
| Binning long reads in metagenomics datasets using composition and coverage information A Wickramarachchi, Y Lin Algorithms for Molecular Biology 17 (1), 14, 2022 | 35 | 2022 |
| MetaBCC-LR: metagenomics binning by coverage and composition for long reads A Wickramarachchi, V Mallawaarachchi, V Rajan, Y Lin Bioinformatics 36 (Supplement_1), i3-i11, 2020 | 32 | 2020 |
| Managing complex workflows in bioinformatics: an interactive toolkit with gpu acceleration A Welivita, I Perera, D Meedeniya, A Wickramarachchi, ... IEEE transactions on nanobioscience 17 (3), 199-208, 2018 | 32 | 2018 |
| Future-proofing genomic data and consent management: a comprehensive review of technology innovations A Oliva, A Kaphle, R Reguant, LMF Sng, NA Twine, Y Malakar, ... GigaScience 13, giae021, 2024 | 24 | 2024 |
| Improving metagenomic binning results with overlapped bins using assembly graphs VG Mallawaarachchi, AS Wickramarachchi, Y Lin Algorithms for Molecular Biology 16 (1), 3, 2021 | 21 | 2021 |
| GraphBin2: Refined and overlapped binning of metagenomic contigs using assembly graphs VG Mallawaarachchi, AS Wickramarachchi, Y Lin 20th International Workshop on Algorithms in Bioinformatics, WABI 2020, 8, 2020 | 20 | 2020 |
| Dimensionality reduction for cluster identification in metagenomics using autoencoders U Maduranga, K Wijegunarathna, S Weerasinghe, I Perera, ... 2020 20th International Conference on Advances in ICT for Emerging Regions …, 2020 | 16 | 2020 |
| LRBinner: binning long reads in metagenomics datasets A Wickramarachchi, Y Lin 21st International Workshop on Algorithms in Bioinformatics (WABI 2021), 2021 | 15 | 2021 |
| Metagenomics binning of long reads using read-overlap graphs A Wickramarachchi, Y Lin RECOMB International Workshop on Comparative Genomics, 260-278, 2022 | 12 | 2022 |
| Solving genomic puzzles: computational methods for metagenomic binning V Mallawaarachchi, A Wickramarachchi, H Xue, B Papudeshi, SR Grigson, ... Briefings in Bioinformatics 25 (5), bbae372, 2024 | 11 | 2024 |
| Experiential learning in bioinformatics–learner support for complex workflow modelling and analysis V Mallawaarachchi, A Wickaramarachchi, A Weliwita, I Perera, ... International Journal of Emerging Technologies in Learning 13 (12), 19-34, 2018 | 11 | 2018 |
| GraphPlas: refined classification of plasmid sequences using assembly graphs A Wickramarachchi, Y Lin IEEE/ACM transactions on computational biology and bioinformatics 19 (1), 57-67, 2021 | 7 | 2021 |
| Efficient bioinformatics computations through gpu accelerated web services V Mallawaarachchi, A Wickramarachchi, A Welivita, I Perera, ... Proceedings of the 2nd International Conference on Algorithms, Computing and …, 2018 | 7 | 2018 |
| Scalable genomic data exchange and analytics with sBeacon A Wickramarachchi, B Hosking, Y Jain, J Grimes, MJ O’Brien, T Wright, ... nature biotechnology 41 (11), 1510-1512, 2023 | 6 | 2023 |
| Risk assessment for controlling mosquito vectors with engineered nucleases: paternal male bias construct GR Hosack, NJ Beeton, A Ickowicz, D Peel, A Wilkins, JM Dambacher, ... Report No. EP2022-4945. Hobart, Australia: CSIRO, 2023 | 6 | 2023 |
| Phylogenetic Tree Construction Using K-Mer Forest-Based Distance Calculation G Gamage, N Gimhana, I Perera, S Bandara, T Pathirana, ... International Association of Online Engineering, 2020 | 6 | 2020 |
| Alignment-free whole genome comparison using k-mer forests G Gamage, N Gimhana, A Wickramarachchi, V Mallawaarachchi, I Perera 2019 19th International Conference on Advances in ICT for Emerging Regions …, 2019 | 5 | 2019 |
| A realtime monitoring platform for workflow subroutines D Rathnayake, A Wickramarachchi, V Mallawaarachchi, D Meedeniya, ... 2018 18th International Conference on Advances in ICT for Emerging Regions …, 2018 | 5 | 2018 |
| Prediction of Antibiotic Susceptibility in E. coli Isolates Using Machine Learning B Talamantes-Becerra, A Wickramarachchi, DC Bauer, L Sng, A Nguyen, ... Health. Innovation. Community: It Starts With Us, 150-155, 2024 | 3 | 2024 |
Vijini MallawaarachchiResearch Fellow at Flinders UniversityVerified email at flinders.edu.au
