| Transcriptional programs of neoantigen-specific TIL in anti-PD-1-treated lung cancers JX Caushi, J Zhang, Z Ji, A Vaghasia, B Zhang, EHC Hsiue, BJ Mog, ... Nature 596 (7870), 126-132, 2021 | 523 | 2021 |
| A Systematic Evaluation of Single-cell RNA-sequencing Imputation Methods W Hou, Z Ji, H Ji, SC Hicks Genome Biology 21 (1), 1, 2020 | 355 | 2020 |
| Assessing GPT-4 for cell type annotation in single-cell RNA-seq analysis W Hou, Z Ji Nature Methods, 1-4, 2024 | 231 | 2024 |
| Association of cord plasma biomarkers of in utero acetaminophen exposure with risk of attention-deficit/hyperactivity disorder and autism spectrum disorder in childhood Y Ji, RE Azuine, Y Zhang, W Hou, X Hong, G Wang, A Riley, C Pearson, ... JAMA psychiatry 77 (2), 180-189, 2020 | 184 | 2020 |
| A statistical framework for differential pseudotime analysis with multiple single-cell RNA-seq samples W Hou, Z Ji, Z Chen, EJ Wherry, SC Hicks, H Ji Nature Communications 14 (July 12, 2021), 7286, 2023 | 90 | 2023 |
| Comparing large language models and human programmers for generating programming code W Hou, Z Ji Advanced Science 12 (8), 2412279, 2025 | 62* | 2025 |
| Distinct myeloid-derived suppressor cell populations in human glioblastoma C Jackson, C Cherry, S Bom, AG Dykema, R Wang, E Thompson, ... Science 387 (6731), eabm5214, 2025 | 62* | 2025 |
| Benchmarking large language models for genomic knowledge with GeneTuring X Shang, X Liao, Z Ji, W Hou Briefings in Bioinformatics 26 (5), bbaf492, 2025 | 60* | 2025 |
| DNA methylation mediates the effect of maternal smoking on offspring birthweight: a birth cohort study of multi-ethnic US mother–newborn pairs R Xu, X Hong, B Zhang, W Huang, W Hou, G Wang, X Wang, T Igusa, ... Clinical Epigenetics 13 (1), 47, 2021 | 59 | 2021 |
| Lung tumor–infiltrating Treg have divergent transcriptional profiles and function linked to checkpoint blockade response AG Dykema, J Zhang, LS Cheung, S Connor, B Zhang, Z Zeng, ... Science immunology 8 (87), eadg1487, 2023 | 55 | 2023 |
| Single-cell ATAC-seq signal extraction and enhancement with SCATE Z Ji, W Zhou, W Hou, H Ji Genome biology 21 (1), 161, 2020 | 53 | 2020 |
| GeneSegNet: a deep learning framework for cell segmentation by integrating gene expression and imaging Y Wang, W Wang, D Liu, W Hou, T Zhou, Z Ji Genome biology 24 (1), 235, 2023 | 44 | 2023 |
| In-utero co-exposure to toxic metals and micronutrients on childhood risk of overweight or obesity: new insight on micronutrients counteracting toxic metals W Huang, T Igusa, G Wang, JP Buckley, X Hong, E Bind, A Steffens, ... International Journal of Obesity 46 (8), 1435-1445, 2022 | 25 | 2022 |
| Drug side-effect profiles prediction: From empirical to structural risk minimization H Jiang, Y Qiu, W Hou, X Cheng, MY Yim, WK Ching IEEE/ACM transactions on computational biology and bioinformatics 17 (2 …, 2018 | 21 | 2018 |
| Hadamard Kernel SVM with applications for breast cancer outcome predictions H Jiang, WK Ching, WS Cheung, W Hou, H Yin BMC systems biology 11 (Suppl 7), 138, 2017 | 20 | 2017 |
| On the number of driver nodes for controlling a Boolean network when the targets are restricted to attractors W Hou, P Ruan, WK Ching, T Akutsu Journal of theoretical biology 463, 1-11, 2019 | 17 | 2019 |
| Assessing Large Multimodal Models for One‐Shot Learning and Interpretability in Biomedical Image Classification W Hou, Q Liu, H Ma, Y Qu, Z Ji Advanced Intelligent Systems, 2400947, 2025 | 15* | 2025 |
| A systematic framework to derive N-glycan biosynthesis process and the automated construction of glycosylation networks W Hou, Y Qiu, N Hashimoto, WK Ching, KF Aoki-Kinoshita BMC bioinformatics 17 (Suppl 7), 240, 2016 | 15 | 2016 |
| Finding and analyzing the minimum set of driver nodes in control of boolean networks W Hou, T Tamura, WK Ching, T Akutsu Advances in Complex Systems 19 (03), 1650006, 2016 | 15 | 2016 |
| Unbiased visualization of single-cell genomic data with scubi W Hou, Z Ji Cell reports methods 2 (1), 2022 | 10 | 2022 |
Zhicheng JiAssistant Professor of Biostatistics and Bioinformatics, Duke University School of MedicineVerified email at duke.edu
