| All-optical electrophysiology in mammalian neurons using engineered microbial rhodopsins DR Hochbaum, Y Zhao, SL Farhi, N Klapoetke, CA Werley, V Kapoor, ... Nature methods 11 (8), 825-833, 2014 | 915 | 2014 |
| COVID-19 tissue atlases reveal SARS-CoV-2 pathology and cellular targets TM Delorey, CGK Ziegler, G Heimberg, R Normand, Y Yang, ... Nature 595 (7865), 107-113, 2021 | 876 | 2021 |
| Voltage imaging and optogenetics reveal behaviour-dependent changes in hippocampal dynamics Y Adam, JJ Kim, S Lou, Y Zhao, ME Xie, D Brinks, H Wu, ... Nature 569 (7756), 413-417, 2019 | 426 | 2019 |
| Single-nucleus and spatial transcriptome profiling of pancreatic cancer identifies multicellular dynamics associated with neoadjuvant treatment WL Hwang, KA Jagadeesh, JA Guo, HI Hoffman, P Yadollahpour, ... Nature genetics 54 (8), 1178-1191, 2022 | 394 | 2022 |
| GABA-receptive microglia selectively sculpt developing inhibitory circuits E Favuzzi, S Huang, GA Saldi, L Binan, LA Ibrahim, M Fernández-Otero, ... Cell 184 (15), 4048-4063. e32, 2021 | 334 | 2021 |
| Copper regulates cyclic-AMP-dependent lipolysis L Krishnamoorthy, JA Cotruvo Jr, J Chan, H Kaluarachchi, A Muchenditsi, ... Nature chemical biology 12 (8), 586-592, 2016 | 239 | 2016 |
| MCMICRO: a scalable, modular image-processing pipeline for multiplexed tissue imaging D Schapiro, A Sokolov, C Yapp, YA Chen, JL Muhlich, J Hess, ... Nature methods 19 (3), 311-315, 2022 | 236 | 2022 |
| A bright and fast red fluorescent protein voltage indicator that reports neuronal activity in organotypic brain slices AS Abdelfattah, SL Farhi, Y Zhao, D Brinks, P Zou, A Ruangkittisakul, ... Journal of Neuroscience 36 (8), 2458-2472, 2016 | 186 | 2016 |
| Pyramidal neuron subtype diversity governs microglia states in the neocortex JA Stogsdill, K Kim, L Binan, SL Farhi, JZ Levin, P Arlotta Nature 608 (7924), 750-756, 2022 | 108 | 2022 |
| Simultaneous CRISPR screening and spatial transcriptomics reveal intracellular, intercellular, and functional transcriptional circuits L Binan, A Jiang, SA Danquah, V Valakh, B Simonton, J Bezney, ... Cell 188 (8), 2141-2158. e18, 2025 | 73 | 2025 |
| MITI minimum information guidelines for highly multiplexed tissue images D Schapiro, C Yapp, A Sokolov, SM Reynolds, YA Chen, D Sudar, Y Xie, ... Nature methods 19 (3), 262-267, 2022 | 72 | 2022 |
| Systematic benchmarking of imaging spatial transcriptomics platforms in FFPE tissues H Wang, R Huang, J Nelson, C Gao, M Tran, A Yeaton, S Krishna, K Felt, ... Nature Communications 16 (1), 10215, 2025 | 63 | 2025 |
| The 22q11. 2 region regulates presynaptic gene-products linked to schizophrenia R Nehme, O Pietiläinen, M Artomov, M Tegtmeyer, V Valakh, L Lehtonen, ... Nature Communications 13 (1), 3690, 2022 | 62 | 2022 |
| Wide-area all-optical neurophysiology in acute brain slices SL Farhi, VJ Parot, A Grama, M Yamagata, AS Abdelfattah, Y Adam, ... Journal of Neuroscience 39 (25), 4889-4908, 2019 | 45 | 2019 |
| Photostick: a method for selective isolation of target cells from culture MP Chien, CA Werley, SL Farhi, AE Cohen Chemical science 6 (3), 1701-1705, 2015 | 36 | 2015 |
| Astrocytic cell adhesion genes linked to schizophrenia correlate with synaptic programs in neurons O Pietiläinen, A Trehan, D Meyer, J Mitchell, M Tegtmeyer, V Valakh, ... Cell reports 42 (1), 2023 | 34 | 2023 |
| Deep unrolled recovery in sparse biological imaging: Achieving fast, accurate results YB Sahel, JP Bryan, B Cleary, SL Farhi, YC Eldar IEEE Signal Processing Magazine 39 (2), 45-57, 2022 | 28 | 2022 |
| Compressed Hadamard microscopy for high-speed optically sectioned neuronal activity recordings VJ Parot, C Sing-Long, Y Adam, UL Böhm, LZ Fan, SL Farhi, AE Cohen Journal of Physics D: Applied Physics 52 (14), 144001, 2019 | 20 | 2019 |
| Coordinated immune networks in leukemia bone marrow microenvironments distinguish response to cellular therapy K Maurer, CY Park, S Mani, M Borji, F Raths, KH Gouin III, L Penter, Y Jin, ... Science immunology 10 (103), eadr0782, 2025 | 17 | 2025 |
| Pyramidal neurons proportionately alter the identity and survival of specific cortical interneuron subtypes SJ Wu, M Dai, SP Yang, C McCann, Y Qiu, GJ Marrero, JA Stogsdill, ... Research Square, rs. 3. rs-4774421, 2024 | 15 | 2024 |