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Samouil Farhi
Samouil Farhi
Broad Institute
Verified email at broadinstitute.org
Title
Cited by
Cited by
Year
All-optical electrophysiology in mammalian neurons using engineered microbial rhodopsins
DR Hochbaum, Y Zhao, SL Farhi, N Klapoetke, CA Werley, V Kapoor, ...
Nature methods 11 (8), 825-833, 2014
9152014
COVID-19 tissue atlases reveal SARS-CoV-2 pathology and cellular targets
TM Delorey, CGK Ziegler, G Heimberg, R Normand, Y Yang, ...
Nature 595 (7865), 107-113, 2021
8762021
Voltage imaging and optogenetics reveal behaviour-dependent changes in hippocampal dynamics
Y Adam, JJ Kim, S Lou, Y Zhao, ME Xie, D Brinks, H Wu, ...
Nature 569 (7756), 413-417, 2019
4262019
Single-nucleus and spatial transcriptome profiling of pancreatic cancer identifies multicellular dynamics associated with neoadjuvant treatment
WL Hwang, KA Jagadeesh, JA Guo, HI Hoffman, P Yadollahpour, ...
Nature genetics 54 (8), 1178-1191, 2022
3942022
GABA-receptive microglia selectively sculpt developing inhibitory circuits
E Favuzzi, S Huang, GA Saldi, L Binan, LA Ibrahim, M Fernández-Otero, ...
Cell 184 (15), 4048-4063. e32, 2021
3342021
Copper regulates cyclic-AMP-dependent lipolysis
L Krishnamoorthy, JA Cotruvo Jr, J Chan, H Kaluarachchi, A Muchenditsi, ...
Nature chemical biology 12 (8), 586-592, 2016
2392016
MCMICRO: a scalable, modular image-processing pipeline for multiplexed tissue imaging
D Schapiro, A Sokolov, C Yapp, YA Chen, JL Muhlich, J Hess, ...
Nature methods 19 (3), 311-315, 2022
2362022
A bright and fast red fluorescent protein voltage indicator that reports neuronal activity in organotypic brain slices
AS Abdelfattah, SL Farhi, Y Zhao, D Brinks, P Zou, A Ruangkittisakul, ...
Journal of Neuroscience 36 (8), 2458-2472, 2016
1862016
Pyramidal neuron subtype diversity governs microglia states in the neocortex
JA Stogsdill, K Kim, L Binan, SL Farhi, JZ Levin, P Arlotta
Nature 608 (7924), 750-756, 2022
1082022
Simultaneous CRISPR screening and spatial transcriptomics reveal intracellular, intercellular, and functional transcriptional circuits
L Binan, A Jiang, SA Danquah, V Valakh, B Simonton, J Bezney, ...
Cell 188 (8), 2141-2158. e18, 2025
732025
MITI minimum information guidelines for highly multiplexed tissue images
D Schapiro, C Yapp, A Sokolov, SM Reynolds, YA Chen, D Sudar, Y Xie, ...
Nature methods 19 (3), 262-267, 2022
722022
Systematic benchmarking of imaging spatial transcriptomics platforms in FFPE tissues
H Wang, R Huang, J Nelson, C Gao, M Tran, A Yeaton, S Krishna, K Felt, ...
Nature Communications 16 (1), 10215, 2025
632025
The 22q11. 2 region regulates presynaptic gene-products linked to schizophrenia
R Nehme, O Pietiläinen, M Artomov, M Tegtmeyer, V Valakh, L Lehtonen, ...
Nature Communications 13 (1), 3690, 2022
622022
Wide-area all-optical neurophysiology in acute brain slices
SL Farhi, VJ Parot, A Grama, M Yamagata, AS Abdelfattah, Y Adam, ...
Journal of Neuroscience 39 (25), 4889-4908, 2019
452019
Photostick: a method for selective isolation of target cells from culture
MP Chien, CA Werley, SL Farhi, AE Cohen
Chemical science 6 (3), 1701-1705, 2015
362015
Astrocytic cell adhesion genes linked to schizophrenia correlate with synaptic programs in neurons
O Pietiläinen, A Trehan, D Meyer, J Mitchell, M Tegtmeyer, V Valakh, ...
Cell reports 42 (1), 2023
342023
Deep unrolled recovery in sparse biological imaging: Achieving fast, accurate results
YB Sahel, JP Bryan, B Cleary, SL Farhi, YC Eldar
IEEE Signal Processing Magazine 39 (2), 45-57, 2022
282022
Compressed Hadamard microscopy for high-speed optically sectioned neuronal activity recordings
VJ Parot, C Sing-Long, Y Adam, UL Böhm, LZ Fan, SL Farhi, AE Cohen
Journal of Physics D: Applied Physics 52 (14), 144001, 2019
202019
Coordinated immune networks in leukemia bone marrow microenvironments distinguish response to cellular therapy
K Maurer, CY Park, S Mani, M Borji, F Raths, KH Gouin III, L Penter, Y Jin, ...
Science immunology 10 (103), eadr0782, 2025
172025
Pyramidal neurons proportionately alter the identity and survival of specific cortical interneuron subtypes
SJ Wu, M Dai, SP Yang, C McCann, Y Qiu, GJ Marrero, JA Stogsdill, ...
Research Square, rs. 3. rs-4774421, 2024
152024
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Articles 1–20