| Identification of acquired antimicrobial resistance genes E Zankari, H Hasman, S Cosentino, M Vestergaard, S Rasmussen, ... Journal of antimicrobial chemotherapy 67 (11), 2640-2644, 2012 | 5513 | 2012 |
| In Silico Detection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing A Carattoli, E Zankari, A García-Fernández, M Voldby Larsen, O Lund, ... Antimicrobial agents and chemotherapy 58 (7), 3895-3903, 2014 | 4721 | 2014 |
| ResFinder 4.0 for predictions of phenotypes from genotypes V Bortolaia, RS Kaas, E Ruppe, MC Roberts, S Schwarz, V Cattoir, ... Journal of Antimicrobial Chemotherapy 75 (12), 3491-3500, 2020 | 3057 | 2020 |
| Multilocus sequence typing of total-genome-sequenced bacteria MV Larsen, S Cosentino, S Rasmussen, C Friis, H Hasman, RL Marvig, ... Journal of clinical microbiology 50 (4), 1355-1361, 2012 | 2598 | 2012 |
| Real-time whole-genome sequencing for routine typing, surveillance, and outbreak detection of verotoxigenic Escherichia coli KG Joensen, F Scheutz, O Lund, H Hasman, RS Kaas, EM Nielsen, ... Journal of clinical microbiology 52 (5), 1501-1510, 2014 | 1554 | 2014 |
| Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage RS Hendriksen, P Munk, P Njage, B Van Bunnik, L McNally, ... Nature communications 10 (1), 1124, 2019 | 1099 | 2019 |
| Rapid and Easy In Silico Serotyping of Escherichia coli Isolates by Use of Whole-Genome Sequencing Data KG Joensen, AMM Tetzschner, A Iguchi, FM Aarestrup, F Scheutz Journal of clinical microbiology 53 (8), 2410-2426, 2015 | 1013 | 2015 |
| Quinolone and macrolide resistance in Campylobacter jejuni and C. coli: resistance mechanisms and trends in human isolates J Engberg, FM Aarestrup, DE Taylor, P Gerner-Smidt, I Nachamkin Emerging infectious diseases 7 (1), 24, 2001 | 986 | 2001 |
| Solving the problem of comparing whole bacterial genomes across different sequencing platforms RS Kaas, P Leekitcharoenphon, FM Aarestrup, O Lund PloS one 9 (8), e104984, 2014 | 955 | 2014 |
| Staphylococcus aureus CC398: host adaptation and emergence of methicillin resistance in livestock LB Price, M Stegger, H Hasman, M Aziz, J Larsen, PS Andersen, ... MBio 3 (1), 10.1128/mbio. 00305-11, 2012 | 936 | 2012 |
| Effect of abolishment of the use of antimicrobial agents for growth promotion on occurrence of antimicrobial resistance in fecal enterococci from food animals in Denmark FM Aarestrup, AM Seyfarth, HD Emborg, K Pedersen, RS Hendriksen, ... Antimicrobial Agents and chemotherapy 45 (7), 2054-2059, 2001 | 921 | 2001 |
| Rapid and precise alignment of raw reads against redundant databases with KMA PTLC Clausen, FM Aarestrup, O Lund BMC bioinformatics 19 (1), 307, 2018 | 865 | 2018 |
| Global Monitoring of Salmonella Serovar Distribution from the World Health Organization Global Foodborne Infections Network Country Data Bank: Results of … RS Hendriksen, AR Vieira, S Karlsmose, DMA Lo Fo Wong, AB Jensen, ... Foodborne pathogens and disease 8 (8), 887-900, 2011 | 859 | 2011 |
| PointFinder: a novel web tool for WGS-based detection of antimicrobial resistance associated with chromosomal point mutations in bacterial pathogens E Zankari, R Allesøe, KG Joensen, LM Cavaco, O Lund, FM Aarestrup Journal of antimicrobial chemotherapy 72 (10), 2764-2768, 2017 | 841 | 2017 |
| PathogenFinder-distinguishing friend from foe using bacterial whole genome sequence data S Cosentino, M Voldby Larsen, F Møller Aarestrup, O Lund PloS one 8 (10), e77302, 2013 | 723 | 2013 |
| An outbreak of multidrug-resistant, quinolone-resistant Salmonella enterica serotype Typhimurium DT104 K Mølbak, DL Baggesen, FM Aarestrup, JM Ebbesen, J Engberg, ... New England Journal of Medicine 341 (19), 1420-1425, 1999 | 683 | 1999 |
| ResFinder–an open online resource for identification of antimicrobial resistance genes in next-generation sequencing data and prediction of phenotypes from genotypes AF Florensa, RS Kaas, PTLC Clausen, D Aytan-Aktug, FM Aarestrup Microbial genomics 8 (1), 000748, 2022 | 680 | 2022 |
| The role of whole genome sequencing in antimicrobial susceptibility testing of bacteria: report from the EUCAST Subcommittee MJ Ellington, O Ekelund, FM Aarestrup, R Canton, M Doumith, C Giske, ... Clinical microbiology and infection 23 (1), 2-22, 2017 | 676 | 2017 |
| Rapid whole-genome sequencing for detection and characterization of microorganisms directly from clinical samples H Hasman, D Saputra, T Sicheritz-Ponten, O Lund, CA Svendsen, ... Journal of clinical microbiology 52 (1), 139-146, 2014 | 671 | 2014 |
| qnrD, a Novel Gene Conferring Transferable Quinolone Resistance in Salmonella enterica Serovar Kentucky and Bovismorbificans Strains of Human Origin LM Cavaco, H Hasman, S Xia, FM Aarestrup Antimicrobial agents and chemotherapy 53 (2), 603-608, 2009 | 662 | 2009 |
Henrik HasmanStatens Serum InstitutVerified email at hasman.dk
