| Interferon-γ drives Treg fragility to promote anti-tumor immunity AE Overacre-Delgoffe, M Chikina, RE Dadey, H Yano, EA Brunazzi, ... Cell 169 (6), 1130-1141. e11, 2017 | 682 | 2017 |
| A temporal switch in the germinal center determines differential output of memory B and plasma cells FJ Weisel, GV Zuccarino-Catania, M Chikina, MJ Shlomchik Immunity 44 (1), 116-130, 2016 | 623 | 2016 |
| Adaptive plasticity of IL-10+ and IL-35+ Treg cells cooperatively promotes tumor T cell exhaustion DV Sawant, H Yano, M Chikina, Q Zhang, M Liao, C Liu, DJ Callahan, ... Nature immunology 20 (6), 724-735, 2019 | 553 | 2019 |
| Individual variation in susceptibility or exposure to SARS-CoV-2 lowers the herd immunity threshold MGM Gomes, MU Ferreira, RM Corder, JG King, C Souto-Maior, ... Journal of theoretical biology 540, 111063, 2022 | 368 | 2022 |
| Treg cells promote the SREBP1-dependent metabolic fitness of tumor-promoting macrophages via repression of CD8+ T cell-derived interferon-γ C Liu, M Chikina, R Deshpande, AV Menk, T Wang, T Tabib, EA Brunazzi, ... Immunity 51 (2), 381-397. e6, 2019 | 353 | 2019 |
| Germinal center B cells selectively oxidize fatty acids for energy while conducting minimal glycolysis FJ Weisel, SJ Mullett, RA Elsner, AV Menk, N Trivedi, W Luo, ... Nature immunology 21 (3), 331-342, 2020 | 280 | 2020 |
| Hundreds of genes experienced convergent shifts in selective pressure in marine mammals M Chikina, JD Robinson, NL Clark Molecular biology and evolution 33 (9), 2182-2192, 2016 | 185 | 2016 |
| LAG3 limits regulatory T cell proliferation and function in autoimmune diabetes Q Zhang, M Chikina, AL Szymczak-Workman, W Horne, JK Kolls, ... Science immunology 2 (9), eaah4569, 2017 | 176 | 2017 |
| Subterranean mammals show convergent regression in ocular genes and enhancers, along with adaptation to tunneling R Partha, BK Chauhan, Z Ferreira, JD Robinson, K Lathrop, KK Nischal, ... Elife 6, e25884, 2017 | 167 | 2017 |
| Kidney-infiltrating T cells in murine lupus nephritis are metabolically and functionally exhausted JS Tilstra, L Avery, AV Menk, RA Gordon, S Smita, LP Kane, M Chikina, ... The Journal of clinical investigation 128 (11), 4884-4897, 2018 | 144 | 2018 |
| Assessing significance in a Markov chain without mixing M Chikina, A Frieze, W Pegden Proceedings of the National Academy of Sciences 114 (11), 2860-2864, 2017 | 143 | 2017 |
| Modeling a human hepatocellular carcinoma subset in mice through coexpression of met and point‐mutant β‐catenin J Tao, E Xu, Y Zhao, S Singh, X Li, G Couchy, X Chen, J Zucman‐Rossi, ... Hepatology 64 (5), 1587-1605, 2016 | 143 | 2016 |
| RERconverge: an R package for associating evolutionary rates with convergent traits A Kowalczyk, WK Meyer, R Partha, W Mao, NL Clark, M Chikina Bioinformatics 35 (22), 4815-4817, 2019 | 134 | 2019 |
| Pathway-level information extractor (PLIER) for gene expression data W Mao, E Zaslavsky, BM Hartmann, SC Sealfon, M Chikina Nature methods 16 (7), 607-610, 2019 | 125 | 2019 |
| CellCODE: a robust latent variable approach to differential expression analysis for heterogeneous cell populations M Chikina, E Zaslavsky, SC Sealfon Bioinformatics 31 (10), 1584-1591, 2015 | 123 | 2015 |
| Global Prediction of Tissue-Specific Gene Expression and Context-Dependent Gene Networks in Caenorhabditis elegans MD Chikina, C Huttenhower, CT Murphy, OG Troyanskaya PLoS computational biology 5 (6), e1000417, 2009 | 121 | 2009 |
| Benchmarking of deep neural networks for predicting personal gene expression from DNA sequence highlights shortcomings A Sasse, B Ng, AE Spiro, S Tasaki, DA Bennett, C Gaiteri, PL De Jager, ... Nature Genetics 55 (12), 2060-2064, 2023 | 119 | 2023 |
| Wnt signaling regulates hepatobiliary repair following cholestatic liver injury in mice H Okabe, J Yang, K Sylakowski, M Yovchev, Y Miyagawa, S Nagarajan, ... Hepatology 64 (5), 1652-1666, 2016 | 118 | 2016 |
| Surface phenotypes of naive and memory B cells in mouse and human tissues NM Weisel, SM Joachim, S Smita, D Callahan, RA Elsner, LJ Conter, ... Nature immunology 23 (1), 135-145, 2022 | 114 | 2022 |
| Ancient convergent losses of Paraoxonase 1 yield potential risks for modern marine mammals WK Meyer, J Jamison, R Richter, SE Woods, R Partha, A Kowalczyk, ... Science 361 (6402), 591-594, 2018 | 95 | 2018 |
