| Performance of a divergence time estimation method under a probabilistic model of rate evolution H Kishino, JL Thorne, WJ Bruno Molecular biology and evolution 18 (3), 352-361, 2001 | 709 | 2001 |
| Weighted neighbor joining: a likelihood-based approach to distance-based phylogeny reconstruction WJ Bruno, ND Socci, AL Halpern Molecular biology and evolution 17 (1), 189-197, 2000 | 626 | 2000 |
| Evolutionary distances for protein-coding sequences: modeling site-specific residue frequencies. AL Halpern, WJ Bruno Molecular biology and evolution 15 (7), 910-917, 1998 | 393 | 1998 |
| Evolutionary HMMs: a Bayesian approach to multiple alignment I Holmes, WJ Bruno Bioinformatics 17 (9), 803-820, 2001 | 239 | 2001 |
| The sequence and analysis of duplication-rich human chromosome 16 J Martin, C Han, LA Gordon, A Terry, S Prabhakar, X She, G Xie, ... Nature 432 (7020), 988-994, 2004 | 211 | 2004 |
| Polymorphisms in the Nine Polymorphic Membrane Proteins of Chlamydia trachomatis across All Serovars: Evidence for Serovar Da Recombination and … JP Gomes, A Nunes, WJ Bruno, MJ Borrego, C Florindo, D Dean Journal of bacteriology 188 (1), 275-286, 2006 | 189 | 2006 |
| Vibrationally enhanced tunneling as a mechanism for enzymatic hydrogen transfer WJ Bruno, W Bialek Biophysical journal 63 (3), 689-699, 1992 | 172 | 1992 |
| Evolution of Chlamydia trachomatis diversity occurs by widespread interstrain recombination involving hotspots JP Gomes, WJ Bruno, A Nunes, N Santos, C Florindo, MJ Borrego, ... Genome research 17 (1), 50-60, 2007 | 169 | 2007 |
| Topological bias and inconsistency of maximum likelihood using wrong models. WJ Bruno, AL Halpern Molecular Biology and Evolution 16 (4), 564-566, 1999 | 149 | 1999 |
| Efficient pooling designs for library screening WJ Bruno, E Knill, DJ Balding, DC Bruce, NA Doggett, WW Sawhill, ... Genomics 26 (1), 21-30, 1995 | 144 | 1995 |
| A comparative survey of non-adaptive pooling designs DJ Balding, WJ Bruno, DC Torney, E Knill Genetic mapping and DNA sequencing, 133-154, 1996 | 136 | 1996 |
| An integrated physical map of human chromosome 16. NA Doggett, LA Goodwin, JG Tesmer, LJ Meincke, DC Bruce, LM Clark, ... Nature 377 (6547 Suppl), 335-365, 1995 | 136 | 1995 |
| Finding regulatory elements using joint likelihoods for sequence and expression profile data. I Holmes, WJ Bruno Ismb 8, 202-210, 2000 | 131 | 2000 |
| Predicting phenotype and emerging strains among Chlamydia trachomatis infections D Dean, WJ Bruno, R Wan, JP Gomes, S Devignot, T Mehari, ... Emerging infectious diseases 15 (9), 1385, 2009 | 125 | 2009 |
| Reverse‐field reciprocity for conducting specimens in magnetic fields HH Sample, WJ Bruno, SB Sample, EK Sichel Journal of applied physics 61 (3), 1079-1084, 1987 | 121 | 1987 |
| Unequal evolutionary rates in the human immunodeficiency virus type 1 (HIV-1) pandemic: the evolutionary rate of HIV-1 slows down when the epidemic rate increases IM Berry, R Ribeiro, M Kothari, G Athreya, M Daniels, HY Lee, W Bruno, ... Journal of virology 81 (19), 10625-10635, 2007 | 118 | 2007 |
| Modeling residue usage in aligned protein sequences via maximum likelihood. WJ Bruno Molecular biology and evolution 13 (10), 1368-1374, 1996 | 107 | 1996 |
| Using independent open-to-closed transitions to simplify aggregated Markov models of ion channel gating kinetics WJ Bruno, J Yang, JE Pearson Proceedings of the National Academy of Sciences 102 (18), 6326-6331, 2005 | 99 | 2005 |
| Recombination in the Genome of Chlamydia trachomatis Involving the Polymorphic Membrane Protein C Gene Relative to ompA and Evidence for Horizontal … JP Gomes, WJ Bruno, MJ Borrego, D Dean Journal of bacteriology 186 (13), 4295-4306, 2004 | 90 | 2004 |
| The consistent phylogenetic signal in genome trees revealed by reducing the impact of noise BE Dutilh, MA Huynen, WJ Bruno, B Snel Journal of molecular evolution 58 (5), 527-539, 2004 | 88 | 2004 |
Deborah DeanProfessor, UCSF; Faculty, UCSF-UCBerkeley Graduate Program in Bioengineering; Director, Children'sVerified email at chori.org
