| CAVER 3.0: a tool for the analysis of transport pathways in dynamic protein structures E Chovancova, A Pavelka, P Benes, O Strnad, J Brezovsky, B Kozlikova, ... Public Library of Science 8 (10), e1002708, 2012 | 1470 | 2012 |
| CAVER Analyst 2.0: analysis and visualization of channels and tunnels in protein structures and molecular dynamics trajectories A Jurcik, D Bednar, J Byska, SM Marques, K Furmanova, L Daniel, ... Bioinformatics 34 (20), 3586-3588, 2018 | 399 | 2018 |
| CAVER: algorithms for analyzing dynamics of tunnels in macromolecules A Pavelka, E Sebestova, B Kozlikova, J Brezovsky, J Sochor, ... IEEE/ACM transactions on computational biology and bioinformatics 13 (3 …, 2015 | 190 | 2015 |
| CAVER Analyst 1.0: graphic tool for interactive visualization and analysis of tunnels and channels in protein structures B Kozlikova, E Sebestova, V Sustr, J Brezovsky, O Strnad, L Daniel, ... Bioinformatics 30 (18), 2684-2685, 2014 | 172 | 2014 |
| Visualization of biomolecular structures: State of the art revisited B Kozlíková, M Krone, M Falk, N Lindow, M Baaden, D Baum, I Viola, ... Computer Graphics Forum 36 (8), 178-204, 2017 | 168 | 2017 |
| Intrinsic-extrinsic convolution and pooling for learning on 3d protein structures P Hermosilla, M Schäfer, M Lang, G Fackelmann, PP Vázquez, ... arXiv preprint arXiv:2007.06252, 2020 | 138 | 2020 |
| Visual analysis of biomolecular cavities: State of the art M Krone, B Kozlíková, N Lindow, M Baaden, D Baum, J Parulek, HC Hege, ... Computer Graphics Forum 35 (3), 527-551, 2016 | 92 | 2016 |
| Instant construction and visualization of crowded biological environments T Klein, L Autin, B Kozlíková, DS Goodsell, A Olson, ME Gröller, I Viola IEEE transactions on visualization and computer graphics 24 (1), 862-872, 2017 | 50 | 2017 |
| Multiscale molecular visualization H Miao, T Klein, D Kouřil, P Mindek, K Schatz, ME Gröller, B Kozlíková, ... Journal of molecular biology 431 (6), 1049-1070, 2019 | 46 | 2019 |
| Computational analysis of protein tunnels and channels J Brezovsky, B Kozlikova, J Damborsky Protein Engineering: Methods and Protocols, 25-42, 2017 | 46 | 2017 |
| Visualization of Biomolecular Structures: State of the Art. B Kozlikova, M Krone, N Lindow, M Falk, M Baaden, D Baum, I Viola, ... EuroVis (STARs), 61-81, 2015 | 44 | 2015 |
| VRdeo: Creating engaging educational material for asynchronous student-teacher exchange using virtual reality V Brůža, J Byška, J Mičan, B Kozlíková Computers & Graphics 98, 280-292, 2021 | 43 | 2021 |
| State of the art of molecular visualization in immersive virtual environments D Kuťák, P Vázquez, T Isenberg, M Krone, M Baaden, J Byška, ... Computer Graphics Forum 42 (6), e14738, 2023 | 42 | 2023 |
| The moving target of visualization software for an increasingly complex world G Reina, H Childs, K Matković, K Bühler, M Waldner, D Pugmire, ... Computers & graphics 87, 12-29, 2020 | 37 | 2020 |
| AnimoAminoMiner: Exploration of protein tunnels and their properties in molecular dynamics J Byška, M Le Muzic, ME Gröller, I Viola, B Kozlikova IEEE transactions on visualization and computer graphics 22 (1), 747-756, 2015 | 37 | 2015 |
| Labels on levels: Labeling of multi-scale multi-instance and crowded 3D biological environments D Kouřil, L Čmolík, B Kozlíková, HY Wu, G Johnson, DS Goodsell, ... IEEE transactions on visualization and computer graphics 25 (1), 977-986, 2018 | 36 | 2018 |
| MoleCollar and tunnel heat map visualizations for conveying spatio‐temporo‐chemical properties across and along protein voids J Byška, A Jurčík, ME Gröller, I Viola, B Kozlikova Computer Graphics Forum 34 (3), 1-10, 2015 | 35 | 2015 |
| Visualization of large molecular trajectories D Duran, P Hermosilla, T Ropinski, B Kozlikova, A Vinacua, PP Vázquez IEEE Transactions on Visualization and Computer Graphics 25 (1), 987-996, 2018 | 31 | 2018 |
| LoopGrafter: a web tool for transplanting dynamical loops for protein engineering J Planas-Iglesias, F Opaleny, P Ulbrich, J Stourac, Z Sanusi, GP Pinto, ... Nucleic Acids Research 50 (W1), W465-W473, 2022 | 30 | 2022 |
| Analysis of long molecular dynamics simulations using interactive focus+ context visualization J Byška, T Trautner, SM Marques, J Damborský, B Kozlíková, M Waldner Computer Graphics Forum 38 (3), 441-453, 2019 | 29 | 2019 |
Jiri SochorProfessor Emeritus, Faculty of Informatics, Masaryk UniversityVerified email at fi.muni.cz
