| In‐depth and 3‐dimensional exploration of the budding yeast phosphoproteome MC Lanz, K Yugandhar, S Gupta, EJ Sanford, VM Faça, S Vega, ... EMBO reports 22 (2), e51121, 2021 | 186 | 2021 |
| Protein–protein interactions: scoring schemes and binding affinity MM Gromiha, K Yugandhar, S Jemimah Current opinion in structural biology 44, 31-38, 2017 | 157 | 2017 |
| Protein–protein binding affinity prediction from amino acid sequence K Yugandhar, MM Gromiha Bioinformatics 30 (24), 3583-3589, 2014 | 155 | 2014 |
| PROXiMATE: a database of mutant protein–protein complex thermodynamics and kinetics S Jemimah, K Yugandhar, M Michael Gromiha Bioinformatics 33 (17), 2787-2788, 2017 | 79 | 2017 |
| Inferring protein-protein interaction networks from mass spectrometry-based proteomic approaches: a mini-review K Yugandhar, S Gupta, H Yu Computational and structural biotechnology journal 17, 805-811, 2019 | 66 | 2019 |
| MaXLinker: proteome-wide cross-link identifications with high specificity and sensitivity K Yugandhar, TY Wang, AKY Leung, MC Lanz, I Motorykin, J Liang, ... Molecular & Cellular Proteomics 19 (3), 554-568, 2020 | 52 | 2020 |
| Feature selection and classification of protein–protein complexes based on their binding affinities using machine learning approaches K Yugandhar, MM Gromiha Proteins: Structure, Function, and Bioinformatics 82 (9), 2088-2096, 2014 | 44 | 2014 |
| Structural basis of TRAPPIII‐mediated Rab1 activation AMN Joiner, BP Phillips, K Yugandhar, EJ Sanford, MB Smolka, H Yu, ... The EMBO journal 40 (12), e107607, 2021 | 39 | 2021 |
| Important amino acid residues involved in folding and binding of protein–protein complexes A Kulandaisamy, V Lathi, K ViswaPoorani, K Yugandhar, MM Gromiha International journal of biological macromolecules 94, 438-444, 2017 | 39 | 2017 |
| Structure-based validation can drastically underestimate error rate in proteome-wide cross-linking mass spectrometry studies K Yugandhar, TY Wang, SD Wierbowski, EE Shayhidin, H Yu Nature methods 17 (10), 985-988, 2020 | 34 | 2020 |
| Deep learning-based method for predicting and classifying the binding affinity of protein-protein complexes R Nikam, K Yugandhar, MM Gromiha Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics 1871 (6), 140948, 2023 | 25 | 2023 |
| Analysis of protein-protein interaction networks based on binding affinity K Yugandhar, M Michael Gromiha Current Protein and Peptide Science 17 (1), 72-81, 2016 | 14 | 2016 |
| Handcuffing intrinsically disordered regions in Mlh1–Pms1 disrupts mismatch repair CM Furman, TY Wang, Q Zhao, K Yugandhar, H Yu, E Alani Nucleic Acids Research 49 (16), 9327-9341, 2021 | 13 | 2021 |
| Progress in methodologies and quality‐control strategies in protein cross‐linking mass spectrometry K Yugandhar, Q Zhao, S Gupta, D Xiong, H Yu Proteomics 21 (23-24), 2100145, 2021 | 11 | 2021 |
| Integrating computational methods and experimental data for understanding the recognition mechanism and binding affinity of protein-protein complexes MM Gromiha, K Yugandhar Progress in Biophysics and Molecular Biology 128, 33-38, 2017 | 11 | 2017 |
| DeepBSRPred: Deep learning-based binding site residue prediction for proteins R Nikam, K Yugandhar, MM Gromiha Amino Acids 55 (10), 1305-1316, 2023 | 10 | 2023 |
| Computational Approaches for Predicting Binding Partners, Interface Residues, and Binding Affinity of Protein–Protein Complexes K Yugandhar, MM Gromiha Methods Mol. Biol., 237-253, 2017 | 9 | 2017 |
| Discrimination and prediction of protein-protein binding affinity using deep learning approach R Nikam, K Yugandhar, M Michael Gromiha International Conference on Intelligent Computing, 809-815, 2018 | 8 | 2018 |
| MAGMa: Your comprehensive tool for differential expression analysis in mass-spectrometry proteomic data S Gupta, JJ Kang, Y Sun, Y Kumar, M Wagner, W Comstock, J Booth, ... bioRxiv, 2024.06. 24.600424, 2024 | 3 | 2024 |
| Binding affinity of protein–protein complexes: experimental techniques, databases and computational methods S Jemimah, Y Kumar, MM Gromiha PROTEIN INTERACTIONS: Computational Methods, Analysis and Applications, 87-108, 2020 | 3 | 2020 |
M. Michael GromihaIndian Institute of Technology MadrasVerified email at iitm.ac.in
