| Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms DE Gordon, J Hiatt, M Bouhaddou, VV Rezelj, S Ulferts, H Braberg, ... Science 370 (6521), eabe9403, 2020 | 772 | 2020 |
| Evolutionary constraint and innovation across hundreds of placental mammals MJ Christmas, IM Kaplow, DP Genereux, MX Dong, GM Hughes, X Li, ... Science 380 (6643), eabn3943, 2023 | 270 | 2023 |
| Drivers of genetic diversity in secondary metabolic gene clusters within a fungal species. AL Lind, JH Wisecaver, C Lameiras, P Wiemann, JM Palmer, NP Keller, ... PLoS biology 15 (11), e2003583, 2017 | 246 | 2017 |
| The birth, evolution and death of metabolic gene clusters in fungi A Rokas, JH Wisecaver, AL Lind Nature Reviews Microbiology 16 (12), 731-744, 2018 | 235 | 2018 |
| A Robust Phylogenomic Time Tree for Biotechnologically and Medically Important Fungi in the Genera Aspergillus and Penicillium JL Steenwyk, XX Shen, AL Lind, GH Goldman, A Rokas MBio 10 (4), 10.1128/mbio. 00925-19, 2019 | 139 | 2019 |
| Accurate and sensitive detection of microbial eukaryotes from whole metagenome shotgun sequencing AL Lind, KS Pollard Microbiome 9 (1), 1-18, 2021 | 128 | 2021 |
| Nanoscale architecture of the Schizosaccharomyces pombe contractile ring. NA McDonald, AL Lind, SE Smith, R Li, K Gould eLife 6, e28865, 2017 | 101 | 2017 |
| Examining the Evolution of the Regulatory Circuit Controlling Secondary Metabolism and Development in the Fungal Genus Aspergillus AL Lind, JH Wisecaver, TD Smith, X Feng, AM Calvo, A Rokas PLoS genetics 11 (3), e1005096, 2015 | 90 | 2015 |
| Genome of the Komodo dragon reveals adaptations in the cardiovascular and chemosensory systems of monitor lizards AL Lind, YYY Lai, Y Mostovoy, AK Holloway, A Iannucci, ACY Mak, ... Nature ecology & evolution 3 (8), 1241-1252, 2019 | 89* | 2019 |
| The fumagillin gene cluster, an example of hundreds of genes under veA control in Aspergillus fumigatus S Dhingra, AL Lind, HC Lin, Y Tang, A Rokas, AM Calvo PLoS One 8 (10), e77147, 2013 | 81 | 2013 |
| Regulation of Secondary Metabolism by the Velvet Complex Is Temperature-Responsive in Aspergillus AL Lind, TD Smith, T Saterlee, AM Calvo, A Rokas G3: Genes| Genomes| Genetics 6 (12), 4023-4033, 2016 | 70 | 2016 |
| Pathogenic allodiploid hybrids of Aspergillus fungi JL Steenwyk, AL Lind, LNA Ries, TF Dos Reis, LP Silva, F Almeida, ... Current Biology 30 (13), 2495-2507. e7, 2020 | 67 | 2020 |
| An LaeA-and BrlA-dependent cellular network governs tissue-specific secondary metabolism in the human pathogen Aspergillus fumigatus AL Lind, FY Lim, AA Soukup, NP Keller, A Rokas Msphere 3 (2), 10.1128/msphere. 00050-18, 2018 | 66 | 2018 |
| Beyond the Biosynthetic Gene Cluster Paradigm: Genome-Wide Coexpression Networks Connect Clustered and Unclustered Transcription Factors to Secondary Metabolic Pathways MJ Kwon, C Steiniger, TC Cairns, JH Wisecaver, AL Lind, C Pohl, ... Microbiology spectrum 9 (2), e00898-21, 2021 | 61 | 2021 |
| Functional characterization of clinical isolates of the opportunistic fungal pathogen Aspergillus nidulans RW Bastos, C Valero, LP Silva, T Schoen, M Drott, V Brauer, ... Msphere 5 (2), 10.1128/msphere. 00153-20, 2020 | 44 | 2020 |
| Variable Suites of Non-effector Genes Are Co-regulated in the Type III Secretion Virulence Regulon across the Pseudomonas syringae Phylogeny TS Mucyn, S Yourstone, AL Lind, S Biswas, MT Nishimura, DA Baltrus, ... PLoS pathogens 10 (1), e1003807, 2014 | 34 | 2014 |
| The Aspergillus fumigatus Mismatch Repair MSH2 Homolog Is Important for Virulence and Azole Resistance TF Dos Reis, LP Silva, PA de Castro, RA do Carmo, MM Marini, ... Msphere 4 (4), e00416-19, 2019 | 29 | 2019 |
| Draft genome sequences of a phylogenetically diverse suite of Pseudomonas syringae strains from multiple source populations DA Baltrus, S Yourstone, A Lind, C Guilbaud, DC Sands, CD Jones, ... Genome announcements 2 (1), e01195-13, 2014 | 22 | 2014 |
| An alternative pathway to eusociality: Exploring the molecular and functional basis of fortress defense SP Lawson, L Sigle, A Lind, AW Legan, JN Mezzanotte, HW Honegger, ... Evolution, 2017 | 12 | 2017 |
| Contiguous and complete assemblies of Blastocystis gut microbiome–associated protists reveal evolutionary diversification to host ecology AL Lind, NA McDonald, ER Gerrick, AS Bhatt, KS Pollard Genome Research 35 (6), 1377-1390, 2025 | 4 | 2025 |
