| Exome sequencing highlights the role of wild-relative introgression in shaping the adaptive landscape of the wheat genome F He, R Pasam, F Shi, S Kant, G Keeble-Gagnere, P Kay, K Forrest, A Fritz, ... Nature genetics 51 (5), 896-904, 2019 | 318 | 2019 |
| GWIS-model-free, fast and exhaustive search for epistatic interactions in case-control GWAS B Goudey, D Rawlinson, Q Wang, F Shi, H Ferra, RM Campbell, L Stern, ... BMC genomics 14 (Suppl 3), S10, 2013 | 94 | 2013 |
| Development and validation of a gene expression tumour classifier for cancer of unknown primary RW Tothill, F Shi, L Paiman, J Bedo, A Kowalczyk, L Mileshkin, E Buela, ... Pathology 47 (1), 7-12, 2015 | 54 | 2015 |
| Using sensors and unmanned aircraft systems for high-throughput phenotyping of biomass in perennial ryegrass breeding trials J Wang, P Badenhorst, A Phelan, L Pembleton, F Shi, N Cogan, ... Frontiers in Plant Science 10, 1381, 2019 | 52 | 2019 |
| Mitigation of inbreeding while preserving genetic gain in genomic breeding programs for outbred plants Z Lin, F Shi, BJ Hayes, HD Daetwyler Theoretical and applied genetics 130 (5), 969-980, 2017 | 43 | 2017 |
| Genomic prediction using prior quantitative trait loci information reveals a large reservoir of underutilised blackleg resistance in diverse canola (Brassica napus L.) lines M Fikere, DM Barbulescu, MM Malmberg, F Shi, JCO Koh, AT Slater, ... The plant genome 11 (2), 170100, 2018 | 40 | 2018 |
| Diversity and Genome Analysis of Australian and Global Oilseed Brassica napus L. Germplasm Using Transcriptomics and Whole Genome Re-sequencing MM Malmberg, F Shi, GC Spangenberg, HD Daetwyler, NOI Cogan Frontiers in Plant Science 9, 508, 2018 | 37 | 2018 |
| Genome-wide association reveals a complex architecture for rust resistance in 2300 worldwide bread wheat accessions screened under various Australian conditions R Joukhadar, G Hollaway, F Shi, S Kant, K Forrest, D Wong, J Petkowski, ... Theoretical and Applied Genetics 133 (9), 2695-2712, 2020 | 36 | 2020 |
| Design of an unmanned ground vehicle and lidar pipeline for the high-throughput phenotyping of biomass in perennial ryegrass P Nguyen, PE Badenhorst, F Shi, GC Spangenberg, KF Smith, ... Remote Sensing 13 (1), 20, 2020 | 31 | 2020 |
| Interactions within the MHC contribute to the genetic architecture of celiac disease B Goudey, G Abraham, E Kikianty, Q Wang, D Rawlinson, F Shi, I Haviv, ... PloS one 12 (3), e0172826, 2017 | 24 | 2017 |
| Applications of class-conditional conformal predictor in multi-class classification F Shi, CS Ong, C Leckie 2013 12th International Conference on Machine Learning and Applications 1 …, 2013 | 21 | 2013 |
| GWISFI: A universal GPU interface for exhaustive search of pairwise interactions in case-control GWAS in minutes Q Wang, F Shi, A Kowalczyk, RM Campbell, B Goudey, D Rawlinson, ... 2014 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2014 | 19 | 2014 |
| Exome sequence genotype imputation in globally diverse hexaploid wheat accessions F Shi, J Tibbits, RK Pasam, P Kay, D Wong, J Petkowski, KL Forrest, ... Theoretical and Applied Genetics 130 (7), 1393-1404, 2017 | 18 | 2017 |
| Development and validation of a phenotyping computational workflow to predict the biomass yield of a large perennial ryegrass breeding field trial A Gebremedhin, P Badenhorst, J Wang, F Shi, E Breen, K Giri, ... Frontiers in Plant Science 11, 689, 2020 | 16 | 2020 |
| Extension of a haplotype-based genomic prediction model to manage multi-environment wheat data using environmental covariates S He, R Thistlethwaite, K Forrest, F Shi, MJ Hayden, R Trethowan, ... Theoretical and applied genetics 132 (11), 3143-3154, 2019 | 16 | 2019 |
| Within and combined season prediction models for perennial ryegrass biomass yield using ground-and air-based sensor data PT Nguyen, F Shi, J Wang, PE Badenhorst, GC Spangenberg, KF Smith, ... Frontiers in Plant Science 13, 950720, 2022 | 14 | 2022 |
| A new method for extracting individual plant bio-characteristics from high-resolution digital images S Rabab, E Breen, A Gebremedhin, F Shi, P Badenhorst, YPP Chen, ... Remote Sensing 13 (6), 1212, 2021 | 11 | 2021 |
| A bi-ordering approach to linking gene expression with clinical annotations in gastric cancer F Shi, C Leckie, G MacIntyre, I Haviv, A Boussioutas, A Kowalczyk BMC bioinformatics 11 (1), 477, 2010 | 9 | 2010 |
| Benefit of introgression depends on level of genetic trait variation in cereal breeding programmes Y Li, F Shi, Z Lin, H Robinson, D Moody, A Rattey, J Godoy, D Mullan, ... Frontiers in Plant Science 13, 786452, 2022 | 7 | 2022 |
| Meta-analysis of gene expression microarrays with missing replicates F Shi, G Abraham, C Leckie, I Haviv, A Kowalczyk BMC bioinformatics 12 (1), 84, 2011 | 5 | 2011 |
