| Assessment of network module identification across complex diseases S Choobdar, ME Ahsen, J Crawford, M Tomasoni, T Fang, D Lamparter, ... Nature methods 16 (9), 843-852, 2019 | 335 | 2019 |
| Cell-specific network constructed by single-cell RNA sequencing data H Dai, L Li, T Zeng, L Chen Nucleic acids research 47 (11), e62-e62, 2019 | 181 | 2019 |
| Detecting tissue-specific early warning signals for complex diseases based on dynamical network biomarkers: study of type 2 diabetes by cross-tissue analysis M Li, T Zeng, R Liu, L Chen Briefings in bioinformatics 15 (2), 229-243, 2014 | 139 | 2014 |
| Discovering personalized driver mutation profiles of single samples in cancer by network control strategy WF Guo, SW Zhang, LL Liu, F Liu, QQ Shi, L Zhang, Y Tang, T Zeng, ... Bioinformatics 34 (11), 1893-1903, 2018 | 113 | 2018 |
| Pattern fusion analysis by adaptive alignment of multiple heterogeneous omics data Q Shi, C Zhang, M Peng, X Yu, T Zeng, J Liu, L Chen Bioinformatics 33 (17), 2706-2714, 2017 | 93 | 2017 |
| Determining protein–protein functional associations by functional rules based on gene ontology and KEGG pathway YH Zhang, T Zeng, L Chen, T Huang, YD Cai Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics 1869 (6), 140621, 2021 | 92 | 2021 |
| Individual-specific edge-network analysis for disease prediction X Yu, J Zhang, S Sun, X Zhou, T Zeng, L Chen Nucleic acids research 45 (20), e170-e170, 2017 | 79 | 2017 |
| Spatial proteomics of immune microenvironment in nonalcoholic steatohepatitis-associated hepatocellular carcinoma M Li, L Wang, L Cong, CC Wong, X Zhang, H Chen, T Zeng, B Li, X Jia, ... Hepatology 79 (3), 560-574, 2024 | 75 | 2024 |
| Identification of protein subcellular localization with network and functional embeddings X Pan, H Li, T Zeng, Z Li, L Chen, T Huang, YD Cai Frontiers in Genetics 11, 626500, 2021 | 73 | 2021 |
| Diagnosing phenotypes of single-sample individuals by edge biomarkers W Zhang, T Zeng, X Liu, L Chen Journal of molecular cell biology 7 (3), 231-241, 2015 | 73 | 2015 |
| EdgeMarker: identifying differentially correlated molecule pairs as edge-biomarkers W Zhang, T Zeng, L Chen Journal of theoretical biology 362, 35-43, 2014 | 73 | 2014 |
| Network biomarkers reveal dysfunctional gene regulations during disease progression T Zeng, S Sun, Y Wang, H Zhu, L Chen The FEBS journal 280 (22), 5682-5695, 2013 | 71 | 2013 |
| A novel network control model for identifying personalized driver genes in cancer WF Guo, SW Zhang, T Zeng, Y Li, J Gao, L Chen PLoS computational biology 15 (11), e1007520, 2019 | 70 | 2019 |
| Spatio-temporal analysis of type 2 diabetes mellitus based on differential expression networks SY Sun, ZP Liu, T Zeng, Y Wang, L Chen Scientific reports 3 (1), 2268, 2013 | 69 | 2013 |
| Identifying transcriptomic signatures and rules for SARS-CoV-2 infection YH Zhang, H Li, T Zeng, L Chen, Z Li, T Huang, YD Cai Frontiers in Cell and Developmental Biology 8, 627302, 2021 | 68 | 2021 |
| Integrative analysis of omics big data XT Yu, T Zeng Computational systems biology: Methods and protocols, 109-135, 2018 | 68 | 2018 |
| Genomic and transcriptomic investigations of the evolutionary transition from oviparity to viviparity W Gao, YB Sun, WW Zhou, ZJ Xiong, L Chen, H Li, TT Fu, K Xu, W Xu, ... Proceedings of the National Academy of Sciences 116 (9), 3646-3655, 2019 | 67 | 2019 |
| Dysfunction of PLA2G6 and CYP2C44-associated network signals imminent carcinogenesis from chronic inflammation to hepatocellular carcinoma M Li, C Li, WX Liu, C Liu, J Cui, Q Li, H Ni, Y Yang, C Wu, C Chen, X Zhen, ... Journal of molecular cell biology 9 (6), 489-503, 2017 | 62 | 2017 |
| Mixture classification model based on clinical markers for breast cancer prognosis T Zeng, J Liu Artificial Intelligence in Medicine 48 (2-3), 129-137, 2010 | 59 | 2010 |
| Deep latent space fusion for adaptive representation of heterogeneous multi-omics data C Zhang, Y Chen, T Zeng, C Zhang, L Chen Briefings in Bioinformatics 23 (2), bbab600, 2022 | 58 | 2022 |
