| Deepzip: Lossless data compression using recurrent neural networks M Goyal, K Tatwawadi, S Chandak, I Ochoa arXiv preprint arXiv:1811.08162, 2018 | 140 | 2018 |
| SPRING: a next-generation compressor for FASTQ data S Chandak, K Tatwawadi, I Ochoa, M Hernaez, T Weissman Bioinformatics 35 (15), 2674-2676, 2019 | 112 | 2019 |
| Effect of lossy compression of quality scores on variant calling I Ochoa, M Hernaez, R Goldfeder, T Weissman, E Ashley Briefings in bioinformatics 18 (2), 183-194, 2017 | 96 | 2017 |
| QVZ: lossy compression of quality values G Malysa, M Hernaez, I Ochoa, M Rao, K Ganesan, T Weissman Bioinformatics 31 (19), 3122-3129, 2015 | 86 | 2015 |
| DZip: Improved general-purpose loss less compression based on novel neural network modeling M Goyal, K Tatwawadi, S Chandak, I Ochoa 2021 data compression conference (DCC), 153-162, 2021 | 74 | 2021 |
| Genomic data compression M Hernaez, D Pavlichin, T Weissman, I Ochoa Annual Review of Biomedical Data Science 2 (1), 19-37, 2019 | 70 | 2019 |
| QualComp: a new lossy compressor for quality scores based on rate distortion theory I Ochoa, H Asnani, D Bharadia, M Chowdhury, T Weissman, G Yona BMC bioinformatics 14 (1), 187, 2013 | 68 | 2013 |
| FaStore: a space-saving solution for raw sequencing data Ł Roguski, I Ochoa, M Hernaez, S Deorowicz Bioinformatics 34 (16), 2748-2756, 2018 | 64 | 2018 |
| iDoComp: a compression scheme for assembled genomes I Ochoa, M Hernaez, T Weissman Bioinformatics 31 (5), 626-633, 2014 | 59 | 2014 |
| Reference based genome compression BG Chern, I Ochoa, A Manolakos, A No, K Venkat, T Weissman 2012 IEEE Information Theory Workshop, 427-431, 2012 | 47 | 2012 |
| CaMoDi: a new method for cancer module discovery A Manolakos, I Ochoa, K Venkat, AJ Goldsmith, O Gevaert BMC genomics 15 (Suppl 10), S8, 2014 | 28 | 2014 |
| GTRAC: fast retrieval from compressed collections of genomic variants K Tatwawadi, M Hernaez, I Ochoa, T Weissman Bioinformatics 32 (17), i479-i486, 2016 | 23 | 2016 |
| Aligned genomic data compression via improved modeling I Ochoa, M Hernaez, T Weissman Journal of bioinformatics and computational biology 12 (06), 1442002, 2014 | 23 | 2014 |
| Chipless RFID tag implementation and machine-learning workflow for robust identification JJF Sokoudjou, F Villa-González, P García-Cardarelli, J Díaz, D Valderas, ... IEEE Transactions on Microwave Theory and Techniques 71 (12), 5147-5159, 2023 | 21 | 2023 |
| An introduction to MPEG-G, the new ISO standard for genomic information representation C Alberti, T Paridaens, J Voges, D Naro, JJ Ahmad, M Ravasi, D Renzi, ... bioRxiv, 426353, 2018 | 21 | 2018 |
| SimiC enables the inference of complex gene regulatory dynamics across cell phenotypes J Peng, G Serrano, IM Traniello, ME Calleja-Cervantes, UV Chembazhi, ... Communications biology 5 (1), 351, 2022 | 19 | 2022 |
| ENANO: Encoder for NANOpore FASTQ files G Dufort y Álvarez, G Seroussi, P Smircich, J Sotelo, I Ochoa, Á Martín Bioinformatics 36 (16), 4506-4507, 2020 | 19 | 2020 |
| GeNNius: an ultrafast drug–target interaction inference method based on graph neural networks U Veleiro, J de la Fuente, G Serrano, M Pizurica, M Casals, ... Bioinformatics 40 (1), btad774, 2024 | 17 | 2024 |
| Phertilizer: Growing a clonal tree from ultra-low coverage single-cell DNA sequencing of tumors LL Weber, C Zhang, I Ochoa, M El-Kebir PLoS computational biology 19 (10), e1011544, 2023 | 17 | 2023 |
| A cluster-based approach to compression of quality scores M Hernaez, I Ochoa, T Weissman 2016 Data Compression Conference (DCC), 261-270, 2016 | 17 | 2016 |
Mikel HernaezCenter for Applied Medical Research (CIMA), University of NavarraVerified email at unav.es
