| The GTEx Consortium atlas of genetic regulatory effects across human tissues GTEx Consortium Science 369 (6509), 1318-1330, 2020 | 4618 | 2020 |
| Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays MJ Aryee, AE Jaffe, H Corrada-Bravo, C Ladd-Acosta, AP Feinberg, ... Bioinformatics 30 (10), 1363-1369, 2014 | 4564 | 2014 |
| Orchestrating high-throughput genomic analysis with Bioconductor W Huber, VJ Carey, R Gentleman, S Anders, M Carlson, BS Carvalho, ... Nature methods 12 (2), 115-121, 2015 | 4081 | 2015 |
| Genetic effects on gene expression across human tissues GTEx Consortium Lead analysts: Aguet François 1 Brown Andrew A. 2 3 4 Castel ... Nature 550 (7675), 204-213, 2017 | 3949 | 2017 |
| Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments JH Bullard, E Purdom, KD Hansen, S Dudoit BMC bioinformatics 11 (1), 94, 2010 | 2236 | 2010 |
| Increased methylation variation in epigenetic domains across cancer types KD Hansen, W Timp, HC Bravo, S Sabunciyan, B Langmead, ... Nature genetics 43 (8), 768-775, 2011 | 1293 | 2011 |
| Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE modENCODE Consortium, S Roy, J Ernst, PV Kharchenko, P Kheradpour, ... Science 330 (6012), 1787-1797, 2010 | 1158 | 2010 |
| The impact of sex on gene expression across human tissues M Oliva, M Muñoz-Aguirre, S Kim-Hellmuth, V Wucher, ADH Gewirtz, ... Science 369 (6509), eaba3066, 2020 | 1094 | 2020 |
| Functional normalization of 450k methylation array data improves replication in large cancer studies JP Fortin, A Labbe, M Lemire, BW Zanke, TJ Hudson, EJ Fertig, ... Genome biology 15 (11), 503, 2014 | 952 | 2014 |
| Biases in Illumina transcriptome sequencing caused by random hexamer priming KD Hansen, SE Brenner, S Dudoit Nucleic acids research 38 (12), e131-e131, 2010 | 951 | 2010 |
| Preprocessing, normalization and integration of the Illumina HumanMethylationEPIC array with minfi JP Fortin, TJ Triche Jr, KD Hansen Bioinformatics 33 (4), 558-560, 2017 | 916 | 2017 |
| BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regions KD Hansen, B Langmead, RA Irizarry Genome biology 13 (10), R83, 2012 | 908 | 2012 |
| Removing technical variability in RNA-seq data using conditional quantile normalization KD Hansen, RA Irizarry, Z Wu Biostatistics 13 (2), 204-216, 2012 | 766 | 2012 |
| Dynamic landscape and regulation of RNA editing in mammals MH Tan, Q Li, R Shanmugam, R Piskol, J Kohler, AN Young, KI Liu, ... Nature 550 (7675), 249-254, 2017 | 682 | 2017 |
| A quantitative proteome map of the human body L Jiang, M Wang, S Lin, R Jian, X Li, J Chan, G Dong, H Fang, ... Cell 183 (1), 269-283. e19, 2020 | 496 | 2020 |
| Reproducible RNA-seq analysis using recount2 L Collado-Torres, A Nellore, K Kammers, SE Ellis, MA Taub, KD Hansen, ... Nature biotechnology 35 (4), 319-321, 2017 | 446 | 2017 |
| Cloud-scale RNA-sequencing differential expression analysis with Myrna B Langmead, KD Hansen, JT Leek Genome biology 11 (8), R83, 2010 | 439 | 2010 |
| Common DNA methylation alterations in multiple brain regions in autism C Ladd-Acosta, KD Hansen, E Briem, MD Fallin, WE Kaufmann, ... Molecular psychiatry 19 (8), 862-871, 2014 | 419 | 2014 |
| Reversible switching between epigenetic states in honeybee behavioral subcastes BR Herb, F Wolschin, KD Hansen, MJ Aryee, B Langmead, R Irizarry, ... Nature neuroscience 15 (10), 1371-1373, 2012 | 383 | 2012 |
| Reconstructing A/B compartments as revealed by Hi-C using long-range correlations in epigenetic data JP Fortin, KD Hansen Genome biology 16 (1), 180, 2015 | 380 | 2015 |
Andrew P. FeinbergDirector, Center for Epigenetics; Bloomberg Distinguished Professor, Johns Hopkins UniversityVerified email at jhu.edu
