| An extensive microRNA-mediated network of RNA-RNA interactions regulates established oncogenic pathways in glioblastoma P Sumazin*, X Yang*, HS Chiu*, WJ Chung, A Iyer, D Llobet-Navas, ... Cell 147 (2), 370-381, 2011 | 819 | 2011 |
| A comprehensive pan-cancer molecular study of gynecologic and breast cancers AC Berger, A Korkut, RS Kanchi, AM Hegde, W Lenoir, W Liu, Y Liu, ... Cancer cell 33 (4), 690-705. e9, 2018 | 688 | 2018 |
| Genomic, pathway network, and immunologic features distinguishing squamous carcinomas JD Campbell, C Yau, R Bowlby, Y Liu, K Brennan, H Fan, AM Taylor, ... Cell reports 23 (1), 194-212. e6, 2018 | 363 | 2018 |
| Pan-cancer analysis of lncRNA regulation supports their targeting of cancer genes in each tumor context HS Chiu*, S Somvanshi*, E Patel, TW Chen, VP Singh, B Zorman, SL Patil, ... Cell reports 23 (1), 297-312. e12, 2018 | 273* | 2018 |
| A pan-cancer analysis reveals high-frequency genetic alterations in mediators of signaling by the TGF-β superfamily A Korkut, S Zaidi, RS Kanchi, S Rao, NR Gough, A Schultz, X Li, ... Cell systems 7 (4), 422-437. e7, 2018 | 175 | 2018 |
| The RNA Atlas expands the catalog of human non-coding RNAs L Lorenzi*, HS Chiu*, F Avila Cobos, S Gross, PJ Volders, R Cannoodt, ... Nature Biotechnology 39 (11), 1453-1465, 2021 | 172 | 2021 |
| LIN28 selectively modulates a subclass of let-7 microRNAs D Ustianenko*, HS Chiu*, T Treiber*, SM Weyn-Vanhentenryck, N Treiber, ... Molecular Cell 71 (2), 271-283.e5, 2018 | 125 | 2018 |
| Cupid: simultaneous reconstruction of microRNA-target and ceRNA networks HS Chiu*, D Llobet-Navas*, X Yang, WJ Chung, A Ambesi-Impiombato, ... Genome research 25 (2), 257-267, 2015 | 117 | 2015 |
| Protein subcellular localization prediction based on compartment-specific features and structure conservation ECY Su, HS Chiu, A Lo, JK Hwang, TY Sung, WL Hsu BMC bioinformatics 8 (1), 1-12, 2007 | 98 | 2007 |
| PSLDoc: protein subcellular localization prediction based on gapped‐dipeptides and probabilistic latent semantic analysis JM Chang, ECY Su, A Lo, HS Chiu, TY Sung, WL Hsu Proteins: Structure, Function, and Bioinformatics 72 (2), 693-710, 2008 | 64 | 2008 |
| High-throughput validation of ceRNA regulatory networks HS Chiu, MR Martínez, M Bansal, A Subramanian, TR Golub, X Yang, ... BMC genomics 18 (1), 418, 2017 | 56 | 2017 |
| Effective methods for bulk RNA-seq deconvolution using scnRNA-seq transcriptomes FA Cobos, MJN Panah, J Epps, X Long, TK Man, HS Chiu, E Chomsky, ... Genome Biology 24 (1), 177, 2023 | 52 | 2023 |
| Pan‐cancer clinical and molecular analysis of racial disparities OD Lara, Y Wang, A Asare, T Xu, HS Chiu, Y Liu, W Hu, P Sumazin, ... Cancer 126 (4), 800-807, 2020 | 47 | 2020 |
| The number of titrated microRNA species dictates ceRNA regulation HS Chiu*, MR Martínez*, EV Komissarova, D Llobet-Navas, M Bansal, ... Nucleic Acids Research 46 (9), 4327–4343, 2018 | 41 | 2018 |
| Enhanced membrane protein topology prediction using a hierarchical classification method and a new scoring function A Lo, HS Chiu, TY Sung, PC Lyu, WL Hsu Journal of Proteome Research 7 (2), 487-496, 2008 | 40 | 2008 |
| Integrative analysis identifies lincRNAs up-and downstream of neuroblastoma driver genes D Rombaut, HS Chiu, B Decaesteker, C Everaert, N Yigit, A Peltier, ... Scientific reports 9 (1), 5685, 2019 | 23 | 2019 |
| Cell lines of the same anatomic site and histologic type show large variability in intrinsic radiosensitivity and relative biological effectiveness to protons and carbon ions DB Flint, SJ Bright, CH McFadden, T Konishi, D Ohsawa, B Turner, SH Lin, ... Medical physics 48 (6), 3243-3261, 2021 | 19 | 2021 |
| MOCHI: a comprehensive cross-platform tool for amplicon-based microbiota analysis JJ Zheng, PW Wang, TW Huang, YJ Yang, HS Chiu, P Sumazin, TW Chen Bioinformatics 38 (18), 4286-4292, 2022 | 10 | 2022 |
| Protein subcellular localization prediction based on compartment-specific biological features CY Su, A Lo, HS Chiu, TY Sung, WL Hsu Computational Systems Bioinformatics, 325-330, 2006 | 10 | 2006 |
| Illuminating lncRNA function through target prediction HS Chiu, S Somvanshi, TW Chen, P Sumazin Long Non-Coding RNAs: Methods and Protocols, 263-295, 2021 | 7 | 2021 |
