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hakim tafer
hakim tafer
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ViennaRNA Package 2.0
R Lorenz, SH Bernhart, C Höner zu Siederdissen, H Tafer, C Flamm, ...
Algorithms for molecular biology 6 (1), 26, 2011
58952011
Analyses of pig genomes provide insight into porcine demography and evolution
MAM Groenen, AL Archibald, H Uenishi, CK Tuggle, Y Takeuchi, ...
Nature 491 (7424), 393-398, 2012
16302012
The genome of the recently domesticated crop plant sugar beet (Beta vulgaris)
JC Dohm, AE Minoche, D Holtgräwe, S Capella-Gutiérrez, F Zakrzewski, ...
Nature 505 (7484), 546-549, 2014
7772014
The African coelacanth genome provides insights into tetrapod evolution
CT Amemiya, J Alföldi, AP Lee, S Fan, H Philippe, I MacCallum, I Braasch, ...
Nature 496 (7445), 311-316, 2013
7742013
Multi-Platform Next-Generation Sequencing of the Domestic Turkey (Meleagris gallopavo): Genome Assembly and Analysis
RA Dalloul, JA Long, AV Zimin, L Aslam, K Beal, L Ann Blomberg, ...
PLoS biology 8 (9), e1000475, 2010
4902010
RNAplex: a fast tool for RNA–RNA interaction search
H Tafer, IL Hofacker
Bioinformatics 24 (22), 2657-2663, 2008
4662008
Thermodynamics of RNA–RNA binding
U Mückstein, H Tafer, J Hackermüller, SH Bernhart, PF Stadler, ...
Bioinformatics 22 (10), 1177-1182, 2006
4582006
The duck genome and transcriptome provide insight into an avian influenza virus reservoir species
Y Huang, Y Li, DW Burt, H Chen, Y Zhang, W Qian, H Kim, S Gan, Y Zhao, ...
Nature genetics 45 (7), 776-783, 2013
4152013
Partition function and base pairing probabilities of RNA heterodimers
SH Bernhart, H Tafer, U Mückstein, C Flamm, PF Stadler, IL Hofacker
Algorithms for Molecular Biology 1 (1), 3, 2006
3742006
The impact of target site accessibility on the design of effective siRNAs
H Tafer, SL Ameres, G Obernosterer, CA Gebeshuber, R Schroeder, ...
Nature biotechnology 26 (5), 578-583, 2008
3462008
ViennaRNA package 2.0. algorithms
R Lorenz, SH Bernhart, C Höner zu Siederdissen, H Tafer, C Flamm, ...
Mol Biol 6 (1), 26, 2011
2612011
Genomic and morphological evidence converge to resolve the enigma of Strepsiptera
O Niehuis, G Hartig, S Grath, H Pohl, J Lehmann, H Tafer, A Donath, ...
Current Biology 22 (14), 1309-1313, 2012
1882012
RNA snp: efficient detection of local RNA secondary structure changes induced by SNP s
R Sabarinathan, H Tafer, SE Seemann, IL Hofacker, PF Stadler, ...
Human mutation 34 (4), 546-556, 2013
1862013
RNApredator: fast accessibility-based prediction of sRNA targets
F Eggenhofer, H Tafer, PF Stadler, IL Hofacker
Nucleic acids research 39 (suppl_2), W149-W154, 2011
1672011
The RNAsnp web server: predicting SNP effects on local RNA secondary structure
R Sabarinathan, H Tafer, SE Seemann, IL Hofacker, PF Stadler, ...
Nucleic acids research 41 (W1), W475-W479, 2013
1602013
ViennaRNA Package 2.0
PF Stadler, IL Hofacker, R Lorenz, SH Bernhart, H Tafer, C Siederdissen
Algorithms 1186, 1748-7188, 2011
1082011
Pathogenic yet environmentally friendly? Black fungal candidates for bioremediation of pollutants
B Blasi, C Poyntner, T Rudavsky, FX Prenafeta-Boldú, S De Hoog, H Tafer, ...
Geomicrobiology Journal 33 (3-4), 308-317, 2016
882016
First evaluation of the microbiome of built cultural heritage by using the Ion Torrent next generation sequencing platform
J Adamiak, A Otlewska, H Tafer, K Lopandic, B Gutarowska, K Sterflinger, ...
International Biodeterioration & Biodegradation 131, 11-18, 2018
782018
Non-coding RNA annotation of the genome of Trichoplax adhaerens
J Hertel, D de Jong, M Marz, D Rose, H Tafer, A Tanzer, B Schierwater, ...
Nucleic acids research 37 (5), 1602-1615, 2009
772009
Amid the possible causes of a very famous foxing: molecular and microscopic insight into L eonardo da V inci's self‐portrait
G Piñar, H Tafer, K Sterflinger, F Pinzari
Environmental Microbiology Reports 7 (6), 849-859, 2015
712015
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Articles 1–20