| Current progress and open challenges for applying deep learning across the biosciences N Sapoval*, A Aghazadeh*, MG Nute, DA Antunes, A Balaji, R Baraniuk, ... Nature Communications 13 (1), 1728, 2022 | 378 | 2022 |
| Large dataset enables prediction of repair after CRISPR–Cas9 editing in primary T cells RT Leenay*, A Aghazadeh*, J Hiatt*, D Tse, TL Roth, R Apathy, E Shifrut, ... Nature Biotechnology 37 (9), 1034-1037, 2019 | 156 | 2019 |
| Data-driven semi-supervised and supervised learning algorithms for health monitoring D Sen, A Aghazadeh, A Mousavi, S Nagarajaiah, R Baraniuk, A Dabak Mechanical Systems and Signal Processing 131, 524-537, 2019 | 104 | 2019 |
| Anomalous nanoparticle surface diffusion in LCTEM is revealed by deep learning-assisted analysis V Jamali, C Hargus, A Ben-Moshe, A Aghazadeh, HD Ha, KK Mandadapu, ... Proceedings of the National Academy of Sciences 118 (10), e2017616118, 2021 | 76 | 2021 |
| On the sparsity of fitness functions and implications for learning DH Brookes, A Aghazadeh, J Listgarten Proceedings of the National Academy of Sciences 119 (1), e2109649118, 2022 | 60 | 2022 |
| Epistatic Net allows the sparse spectral regularization of deep neural networks for inferring fitness functions A Aghazadeh, H Nisonoff, O Ocal, DH Brookes, Y Huang, OO Koyluoglu, ... Nature communications 12 (1), 5225, 2021 | 59* | 2021 |
| MISSION: Ultra Large-scale Feature Selection using Count-Sketches A Aghazadeh, R Spring, D LeJeune, G Dasarathy, A Shrivastava, ... International Conference on Machine Learning Research 80, 80-88, 2018 | 53 | 2018 |
| Sparsity-based approaches for damage detection in plates D Sen, A Aghazadeh, A Mousavi, S Nagarajaiah, R Baraniuk Mechanical Systems and Signal Processing 117, 333-346, 2019 | 48 | 2019 |
| Universal microbial diagnostics using random DNA probes A Aghazadeh, AY Lin, MA Sheikh, AL Chen, LM Atkins, CL Johnson, ... Science advances 2 (9), e1600025, 2016 | 24 | 2016 |
| Insense: Incoherent sensor selection for sparse signals A Aghazadeh, M Golbabaee, A Lan, R Baraniuk Signal Processing 150, 57-65, 2018 | 13 | 2018 |
| CRISPRL and: Interpretable large-scale inference of DNA repair landscape based on a spectral approach A Aghazadeh, O Ocal, K Ramchandran Bioinformatics 36, i560-i568, 2020 | 11 | 2020 |
| Efficiently Computing Sparse Fourier Transforms of -ary Functions YE Erginbas, JS Kang, A Aghazadeh, K Ramchandran IEEE International Symposium on Information Theory (ISIT), 2023 | 9 | 2023 |
| AstroAgents: A Multi-Agent AI for Hypothesis Generation from Mass Spectrometry Data D Saeedi, D Buckner, JC Aponte, A Aghazadeh International Conference on Learning Representations (ICLR) 2025 Workshop on …, 2025 | 7 | 2025 |
| On Recovering Higher-order Interactions from Protein Language Models D Tsui, A Aghazadeh International Conference on Learning Representations (ICLR) 2024 Workshop on …, 2024 | 6 | 2024 |
| RHash: Robust hashing via l∞-norm distortion A Aghazadeh, A Lan, A Shrivastava, R Baraniuk Proceedings of the 26th International Joint Conference on Artificial …, 2017 | 5 | 2017 |
| SHAP zero explains biological sequence models with near-zero marginal cost for future queries D Tsui, A Musharaf, YE Erginbas, JS Kang, A Aghazadeh Conference on Neural Information Processing Systems (NeurIPS) 2025, 2025 | 4* | 2025 |
| ProtiGeno: a prokaryotic short gene finder using protein language models T Tu, G Krishna, A Aghazadeh International Conference on Machine Learning Research (ICML) Workshop on …, 2023 | 4 | 2023 |
| Universal microbial diagnostics using random DNA probes RA Drezek, RG Baraniuk, A AGHAZADEH, M SHEIKH, P BUGGA US Patent 11,104,964, 2021 | 4 | 2021 |
| Challenges and Opportunities in Using Amino Acids to Decode Carbonaceous Chondrite and Asteroid Parent Body Processes JC Aponte, HL McLain, D Saeedi, A Aghazadeh, JE Elsila, DP Glavin, ... Astrobiology 25 (6), 437-449, 2025 | 2 | 2025 |
| AI scientist 'team' joins the search for extraterrestrial life C Biever Nature 641 (8061), 568-569, 2025 | 2 | 2025 |
Richard BaraniukC. Sidney Burrus Professor, Electrical & Computer Engineering, Rice UniversityVerified email at rice.edu
