| Parmbsc1: a refined force field for DNA simulations I Ivani, PD Dans, A Noy, A Pérez, I Faustino, J Walther, P Andrio, R Goñi, ... Nature methods 13 (1), 55, 2016 | 1177* | 2016 |
| μABC: a systematic microsecond molecular dynamics study of tetranucleotide sequence effects in B-DNA M Pasi, JH Maddocks, D Beveridge, TC Bishop, DA Case, T Cheatham III, ... Nucleic acids research 42 (19), 12272-12283, 2014 | 240 | 2014 |
| Direct measurement of the dielectric polarization properties of DNA A Cuervo, PD Dans, JL Carrascosa, M Orozco, G Gomila, L Fumagalli Proceedings of the National Academy of Sciences 111 (35), E3624-E3630, 2014 | 234 | 2014 |
| Multiscale simulation of DNA PD Dans, J Walther, H Gómez, M Orozco Current opinion in structural biology 37, 29-45, 2016 | 197 | 2016 |
| Connecting proline and γ-aminobutyric acid in stressed plants through non-enzymatic reactions S Signorelli, PD Dans, EL Coitiño, O Borsani, J Monza PLoS One 10 (3), e0115349, 2015 | 185 | 2015 |
| Epigenetic loss of RNA-methyltransferase NSUN5 in glioma targets ribosomes to drive a stress adaptive translational program M Janin, V Ortiz-Barahona, MC de Moura, A Martínez-Cardús, ... Acta Neuropathologica, 1-22, 2019 | 184 | 2019 |
| The structural impact of DNA mismatches G Rossetti, PD Dans, I Gomez-Pinto, I Ivani, C Gonzalez, M Orozco Nucleic acids research 43 (8), 4309-4321, 2015 | 182 | 2015 |
| A coarse grained model for atomic-detailed DNA simulations with explicit electrostatics PD Dans, A Zeida, MR Machado, S Pantano Journal of chemical theory and computation 6 (5), 1711-1725, 2010 | 178 | 2010 |
| Another coarse grain model for aqueous solvation: WAT FOUR? L Darré, MR Machado, PD Dans, FE Herrera, S Pantano Journal of Chemical Theory and Computation 6 (12), 3793-3807, 2010 | 168 | 2010 |
| Impact of DNA methylation on 3D genome structure D Buitrago, M Labrador, JP Arcon, R Lema, O Flores, A Esteve-Codina, ... Nature Communication 12, 3243, 2021 | 157 | 2021 |
| How accurate are accurate force-fields for B-DNA? PD Dans, I Ivani, A Hospital, G Portella, C González, M Orozco Nucleic Acids Research 45 (7), 4217-4230, 2017 | 154* | 2017 |
| Long-timescale dynamics of the Drew–Dickerson dodecamer PD Dans, L Danilāne, I Ivani, T Dršata, F Lankaš, A Hospital, J Walther, ... Nucleic acids research 44 (9), 4052-4066, 2016 | 146* | 2016 |
| Glyceraldehyde-3-phosphate dehydrogenase is a chaperone that allocates labile heme in cells EA Sweeny, AB Singh, R Chakravarti, O Martinez-Guzman, A Saini, ... Journal of Biological Chemistry 293 (37), 14557-14568, 2018 | 138 | 2018 |
| Exploring polymorphisms in B-DNA helical conformations PD Dans, A Perez, I Faustino, R Lavery, M Orozco Nucleic acids research 40 (21), 10668-10678, 2012 | 104 | 2012 |
| Unraveling the sequence-dependent polymorphic behavior of d (CpG) steps in B-DNA PD Dans, I Faustino, F Battistini, K Zakrzewska, R Lavery, M Orozco Nucleic acids research 42 (18), 11304-11320, 2014 | 94 | 2014 |
| Switching reversibility to irreversibility in glycogen synthase kinase 3 inhibitors: clues for specific design of new compounds DI Perez, V Palomo, C Pérez, C Gil, PD Dans, FJ Luque, S Conde, ... Journal of Medicinal Chemistry 54 (12), 4042-4056, 2011 | 92 | 2011 |
| Saturation of recognition elements blocks evolution of new tRNA identities A Saint-Léger, C Bello, PD Dans, AG Torres, EM Novoa, N Camacho, ... Science advances 2 (4), e1501860, 2016 | 63 | 2016 |
| A hybrid all-atom/coarse grain model for multiscale simulations of DNA MR Machado, PD Dans, S Pantano Physical Chemistry Chemical Physics 13 (40), 18134-18144, 2011 | 62 | 2011 |
| BIGNASim: a NoSQL database structure and analysis portal for nucleic acids simulation data A Hospital, P Andrio, C Cugnasco, L Codo, Y Becerra, PD Dans, ... Nucleic acids research 44 (D1), D272-D278, 2016 | 60 | 2016 |
| The static and dynamic structural heterogeneities of B-DNA: extending Calladine–Dickerson rules PD Dans, A Balaceanu, M Pasi, AS Patelli, D Petkevičiūtė, J Walther, ... Nucleic acids research 47 (21), 11090-11102, 2019 | 56 | 2019 |
Modesto OrozcoProfessor of Biochemistry, Universtity of Barcelona and Group Leader IRB BarcelonaVerified email at irbbarcelona.org
