| Global Distribution of mcr Gene Variants in 214K Metagenomic Samples HM Martiny, P Munk, C Brinch, J Szarvas, FM Aarestrup, TN Petersen Msystems 7 (2), e00105-22, 2022 | 36 | 2022 |
| PlasmidHostFinder: prediction of plasmid hosts using random forest D Aytan-Aktug, PTLC Clausen, J Szarvas, P Munk, S Otani, M Nguyen, ... Msystems 7 (2), e01180-21, 2022 | 22 | 2022 |
| SourceFinder: A machine-learning-based tool for identification of chromosomal, plasmid, and bacteriophage sequences from assemblies D Aytan-Aktug, V Grigorjev, J Szarvas, PTLC Clausen, P Munk, M Nguyen, ... Microbiology Spectrum 10 (6), e02641-22, 2022 | 17 | 2022 |
| Large scale automated phylogenomic analysis of bacterial isolates and the Evergreen Online platform J Szarvas, J Ahrenfeldt, JLB Cisneros, MCF Thomsen, FM Aarestrup, ... Communications Biology 3 (1), 137, 2020 | 16 | 2020 |
| Mobilisation and analyses of publicly available SARS-CoV-2 data for pandemic responses N Rahman, C O'cathail, A Zyoud, A Sokolov, B Oude Munnink, B Grüning, ... Microbial genomics 10 (2), 001188, 2024 | 12 | 2024 |
| Phylogenetic investigation of norovirus transmission between humans and animals N Villabruna, RW Izquierdo Lara, J Szarvas, MPG Koopmans, M Graaf Viruses 12 (11), 1287, 2020 | 12 | 2020 |
| Danish Whole-Genome-Sequenced Candida albicans and Candida glabrata Samples Fit into Globally Prevalent Clades J Szarvas, AR Rebelo, V Bortolaia, P Leekitcharoenphon, ... Journal of Fungi 7 (11), 962, 2021 | 11 | 2021 |
| Global distribution of mcr gene variants in 214K metagenomic samples. mSystems 7: e0010522 HM Martiny, P Munk, C Brinch, J Szarvas, FM Aarestrup, TN Petersen | 9 | 2022 |
| Whole genomes from bacteria collected at diagnostic units around the world 2020 S Nag, G Larsen, J Szarvas, LEK Birkedahl, GM Gulyás, WJ Ciok, ... Scientific data 10 (1), 628, 2023 | 8 | 2023 |
| Rapid open-source snp-based clustering offers an alternative to core genome mlst for outbreak tracing in a hospital setting J Szarvas, MD Bartels, H Westh, O Lund Frontiers in Microbiology 12, 636608, 2021 | 8 | 2021 |
| Large-scale phenotypic and genomic analysis of Listeria monocytogenes reveals diversity in the sensitivity to quaternary ammonium compounds but not to … M Ivanova, M Laage Kragh, J Szarvas, ES Tosun, NF Holmud, A Gmeiner, ... Applied and Environmental Microbiology, e01829-24, 2025 | 7 | 2025 |
| High throughput single cell metagenomic sequencing with semi-permeable capsules: unraveling microbial diversity at the single-cell level in sewage and fecal microbiomes M Ling, J Szarvas, V Kurmauskaitė, V Kiseliovas, R Žilionis, B Avot, ... Frontiers in Microbiology 15, 1516656, 2025 | 7 | 2025 |
| Complete genome sequences of Cytobacillus sp., Domibacillus sp., Enterobacter sp., Neisseria sp., Pseudomonas sp., and Streptococcus sp. strains from … J Szarvas, S Nag, S Otani, LEK Birkedahl, FD Møller, S Asante-Sefa, ... Microbiology Resource Announcements 13 (7), e01040-23, 2024 | 2 | 2024 |
