| The PRIDE database and related tools and resources in 2019: improving support for quantification data Y Perez-Riverol, A Csordas, J Bai, M Bernal-Llinares, S Hewapathirana, ... Nucleic acids research 47 (D1), D442-D450, 2019 | 6972 | 2019 |
| Comprehensive analysis of alternative splicing across tumors from 8,705 patients A Kahles, KV Lehmann, NC Toussaint, M Hüser, SG Stark, ... Cancer cell 34 (2), 211-224. e6, 2018 | 964 | 2018 |
| BioContainers: an open-source and community-driven framework for software standardization F da Veiga Leprevost, BA Grüning, S Alves Aflitos, HL Röst, J Uszkoreit, ... Bioinformatics 33 (16), 2580-2582, 2017 | 855 | 2017 |
| OpenMS: a flexible open-source software platform for mass spectrometry data analysis HL Röst, T Sachsenberg, S Aiche, C Bielow, H Weisser, F Aicheler, ... Nature methods 13 (9), 741-748, 2016 | 782 | 2016 |
| Dual roles of the nuclear cap-binding complex and SERRATE in pre-mRNA splicing and microRNA processing in Arabidopsis thaliana S Laubinger, T Sachsenberg, G Zeller, W Busch, JU Lohmann, G Rätsch, ... Proceedings of the National Academy of Sciences 105 (25), 8795-8800, 2008 | 468 | 2008 |
| Stress‐induced changes in the Arabidopsis thaliana transcriptome analyzed using whole‐genome tiling arrays G Zeller, SR Henz, CK Widmer, T Sachsenberg, G Rätsch, D Weigel, ... The Plant Journal 58 (6), 1068-1082, 2009 | 377 | 2009 |
| Photo-cross-linking and high-resolution mass spectrometry for assignment of RNA-binding sites in RNA-binding proteins K Kramer, T Sachsenberg, BM Beckmann, S Qamar, KL Boon, ... Nature methods 11 (10), 1064-1070, 2014 | 305 | 2014 |
| ThermoRawFileParser: modular, scalable, and cross-platform RAW file conversion N Hulstaert, J Shofstahl, T Sachsenberg, M Walzer, H Barsnes, L Martens, ... Journal of proteome research 19 (1), 537-542, 2019 | 252 | 2019 |
| Ten simple rules for taking advantage of Git and GitHub Y Perez-Riverol, L Gatto, R Wang, T Sachsenberg, J Uszkoreit, ... PLoS computational biology 12 (7), e1004947, 2016 | 221 | 2016 |
| The mzTab data exchange format: communicating mass-spectrometry-based proteomics and metabolomics experimental results to a wider audience J Griss, AR Jones, T Sachsenberg, M Walzer, L Gatto, J Hartler, ... Molecular & Cellular Proteomics 13 (10), 2765-2775, 2014 | 171 | 2014 |
| At-TAX: a whole genome tiling array resource for developmental expression analysis and transcript identification in Arabidopsis thaliana S Laubinger, G Zeller, SR Henz, T Sachsenberg, CK Widmer, N Naouar, ... Genome biology 9 (7), R112, 2008 | 119 | 2008 |
| A proteomics sample metadata representation for multiomics integration and big data analysis C Dai, A Füllgrabe, J Pfeuffer, EM Solovyeva, J Deng, P Moreno, ... Nature Communications 12 (1), 5854, 2021 | 113 | 2021 |
| A computational platform for high-throughput analysis of RNA sequences and modifications by mass spectrometry S Wein, B Andrews, T Sachsenberg, H Santos-Rosa, O Kohlbacher, ... Nature communications 11 (1), 926, 2020 | 110 | 2020 |
| OpenMS–a platform for reproducible analysis of mass spectrometry data J Pfeuffer, T Sachsenberg, O Alka, M Walzer, A Fillbrunn, L Nilse, ... Journal of biotechnology 261, 142-148, 2017 | 110 | 2017 |
| MetaProSIP: automated inference of stable isotope incorporation rates in proteins for functional metaproteomics T Sachsenberg, FA Herbst, M Taubert, R Kermer, N Jehmlich, ... Journal of proteome research 14 (2), 619-627, 2015 | 87 | 2015 |
| Global effects of the small RNA biogenesis machinery on the Arabidopsis thaliana transcriptome S Laubinger, G Zeller, SR Henz, S Buechel, T Sachsenberg, JW Wang, ... Proceedings of the National Academy of Sciences 107 (41), 17466-17473, 2010 | 83 | 2010 |
| In-depth analysis of protein inference algorithms using multiple search engines and well-defined metrics E Audain, J Uszkoreit, T Sachsenberg, J Pfeuffer, X Liang, H Hermjakob, ... Journal of proteomics 150, 170-182, 2017 | 79 | 2017 |
| The mzquantml data standard for mass spectrometry–based quantitative studies in proteomics M Walzer, D Qi, G Mayer, J Uszkoreit, M Eisenacher, T Sachsenberg, ... Molecular & cellular proteomics 12 (8), 2332-2340, 2013 | 76 | 2013 |
| mzTab-M: a data standard for sharing quantitative results in mass spectrometry metabolomics N Hoffmann, J Rein, T Sachsenberg, J Hartler, K Haug, G Mayer, O Alka, ... Analytical chemistry 91 (5), 3302-3310, 2019 | 69 | 2019 |
| Expanding the use of spectral libraries in proteomics EW Deutsch, Y Perez-Riverol, RJ Chalkley, M Wilhelm, S Tate, ... Journal of proteome research 17 (12), 4051-4060, 2018 | 69 | 2018 |
Yasset Perez-RiverolProteomics Services, EMBL-EBI, UKVerified email at ebi.ac.uk
