| CoV2K model, a comprehensive representation of SARS-CoV-2 knowledge and data interplay T Alfonsi, R Al Khalaf, S Ceri, A Bernasconi Scientific Data 9 (1), 260, 2022 | 18 | 2022 |
| CoV2K: a knowledge base of SARS-CoV-2 variant impacts R Al Khalaf, T Alfonsi, S Ceri, A Bernasconi International Conference on Research Challenges in Information Science, 274-282, 2021 | 17 | 2021 |
| EpiSurf: metadata-driven search server for analyzing amino acid changes within epitopes of SARS-CoV-2 and other viral species A Bernasconi, L Cilibrasi, R Al Khalaf, T Alfonsi, S Ceri, P Pinoli, ... Database 2021, baab059, 2021 | 15 | 2021 |
| CoVEffect: interactive system for mining the effects of SARS-CoV-2 mutations and variants based on deep learning G Serna García, R Al Khalaf, F Invernici, S Ceri, A Bernasconi GigaScience 12, giad036, 2023 | 13 | 2023 |
| Report on Omicron Spike mutations on epitopes and immunological/epidemiological/kinetics effects from literature A Bernasconi, P Pinoli, R Al Khalaf, T Alfonsi, A Canakoglu, L Cilibrasi, ... Availabe online: https://virological. org/t/report-on-omicron-spike …, 2021 | 7 | 2021 |
| Analysis of co-occurring and mutually exclusive amino acid changes and detection of convergent and divergent evolution events in SARS-CoV-2 R Al Khalaf, A Bernasconi, P Pinoli, S Ceri Computational and structural biotechnology journal 20, 4238-4250, 2022 | 6 | 2022 |
| Systematic analysis of SARS-CoV-2 Omicron subvariants’ impact on B and T cell epitopes R Al Khalaf, A Bernasconi, P Pinoli PLoS One 19 (9), e0307873, 2024 | 1 | 2024 |
| OntoEffect: An OntoUML-Based Ontology to Explain SARS-CoV-2 Variants' Effects R Al Khalaf, A Bernasconi, S Alberto García Proceedings of the 15th International Joint Conference on Knowledge …, 2023 | 1 | 2023 |
| Protective measures practices among hospitals’ professionals working in a fragile health system T Alsuliman, L Alasadi, A Alrstom, G Alabdallah, J Sneij, R Al Khalaf, ... Disaster Medicine and Public Health Preparedness 17, e84, 2023 | 1 | 2023 |
| Assessment of medical students’ preparedness and willingness for integration into a war-torn healthcare system: the example of COVID-19 pandemic scenario T Alsuliman, L Alasadi, RA Kasem, M Hawat, M Almansour, R Al Khalaf, ... Medicine, Conflict and Survival 38 (1), 31-48, 2022 | 1 | 2022 |
| Biological and Medical Ontologies: Disease Ontology (DO) R Al Khalaf, A Bernasconi, M Masseroli Encyclopedia of Bioinformatics and Computational Biology, 2nd Edition 2, 410-421, 2025 | | 2025 |
| Transformer-Based Biomedical Text Extraction R Al Khalaf, A Bernasconi Encyclopedia of Bioinformatics and Computational Biology, 2nd Edition 2, 180-189, 2025 | | 2025 |
| Biological and Medical Ontologies: Human Phenotype Ontology (HPO) R Al Khalaf, A Bernasconi, M Masseroli Encyclopedia of Bioinformatics and Computational Biology, 2nd Edition 2, 422-431, 2025 | | 2025 |
| Knowledge modeling and data analysis methods for understanding the viral genome evolution R Al Khalaf | | 2023 |
| A unique approach to SARS-CoV-2 data and knowledge ingestion, integration and querying A Bernasconi, R Al Khalaf, T Alfonsi, A Canakoglu, L Cilibrasi, A Gulino, ... | | |
