| The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update E Afgan, D Baker, B Batut, M Van Den Beek, D Bouvier, M Čech, J Chilton, ... Nucleic acids research 46 (W1), W537-W544, 2018 | 5156* | 2018 |
| The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update E Afgan, D Baker, M Van den Beek, D Blankenberg, D Bouvier, M Čech, ... Nucleic acids research 44 (W1), W3-W10, 2016 | 2311 | 2016 |
| Mapping monomeric threading to protein–protein structure prediction A Guerler, B Govindarajoo, Y Zhang Journal of chemical information and modeling 53 (3), 717-725, 2013 | 96 | 2013 |
| Novel protein folds and their nonsequential structural analogs A Guerler, EW Knapp Protein Science 17 (8), 1374-1382, 2008 | 85 | 2008 |
| Superimpose: a 3D structural superposition server RA Bauer, PE Bourne, A Formella, C Frömmel, C Gille, A Goede, ... Nucleic acids research 36 (suppl_2), W47-W54, 2008 | 51 | 2008 |
| A network of splice isoforms for the mouse HD Li, R Menon, R Eksi, A Guerler, Y Zhang, GS Omenn, Y Guan Scientific Reports 6 (1), 24507, 2016 | 26 | 2016 |
| Symmetric structures in the universe of protein folds A Guerler, C Wang, EW Knapp Journal of chemical information and modeling 49 (9), 2147-2151, 2009 | 20 | 2009 |
| Circular permuted proteins in the universe of protein folds T Schmidt‐Goenner, A Guerler, B Kolbeck, EW Knapp Proteins: Structure, Function, and Bioinformatics 78 (7), 1618-1630, 2010 | 18 | 2010 |
| Selection and flexible optimization of binding modes from conformation ensembles A Gürler, S Moll, M Weber, H Meyer, F Cordes Biosystems 92 (1), 42-48, 2008 | 12 | 2008 |
| Integrating multimeric threading with high-throughput experiments for structural interactome of Escherichia coli W Gong, A Guerler, C Zhang, E Warner, C Li, Y Zhang Journal of molecular biology 433 (10), 166944, 2021 | 9 | 2021 |
| GIS: a comprehensive source for protein structure similarities A Guerler, EW Knapp Nucleic acids research 38 (suppl_2), W46-W52, 2010 | 7 | 2010 |
| Strategies of non-sequential protein structure alignments A Guerler, EW Knapp Genome Informatics 2009: Genome Informatics Series Vol. 22, 21-29, 2010 | 4 | 2010 |
| Modeling the functional relationship network at the splice isoform level through heterogeneous data integration HD Li, R Menon, R Eksi, A Guerler, Y Zhang, GS Omenn, Y Guan bioRxiv, 001719, 2014 | 3 | 2014 |
| Evaluation of sequence alignments of distantly related sequence pairs with respect to structural similarity A Gürler, EW Knapp Genome Informatics 18, 183-191, 2007 | 3 | 2007 |
| Sampling geometries of protein-protein complexes A Guerler, S Lorenzen, F Krull, EW Knapp Genome Informatics 20, 260-269, 2008 | 2 | 2008 |
| Fast and accurate genome-wide predictions and structural modeling of protein–protein interactions using Galaxy A Guerler, D Baker, M van den Beek, B Gruening, D Bouvier, N Coraor, ... BMC bioinformatics 24 (1), 263, 2023 | 1 | 2023 |
| From data to publication in a browser with BRC-Analytics: Evolutionary dynamics of coding overlaps in measles virus A Nekrutenko, D Callan, M Van Den Beek, D Baker, D Rogers, W Maier, ... bioRxiv, 2025.10. 13.682095, 2025 | | 2025 |
| Standardizing RNA-seq Analysis of Fungal Pathogens Using BRC-Analytics and Agentic AI: A Candidozyma auris Case Study A Nekrutenko, D Callan, M Van Den Beek, D Baker, D Rogers, A Guerler, ... bioRxiv, 2025.12. 30.697050, 2025 | | 2025 |
| Visualizations: JavaScript Plugins S Hiltemann, Y Hoogstrate, B Grüning, A Guerler, D Baker Galaxy Training Network, 2023 | | 2023 |
| Modeling the functional relationship network at the isoform level through heterogeneous data integration HD Li, R Menon, R Eksi, A Guerler, Y Zhang, GS Omenn, Y Guan | | |
